Agrilus planipennis (emerald ash borer): 108733043
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Entry
108733043 CDS
T07419
Name
(RefSeq) collagen alpha-2(IV) chain isoform X1
KO
K06237
collagen type IV alpha
Organism
apln
Agrilus planipennis (emerald ash borer)
Pathway
apln04382
Cornified envelope formation
apln04512
ECM-receptor interaction
apln04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
apln00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
108733043
09140 Cellular Processes
09142 Cell motility
04820 Cytoskeleton in muscle cells
108733043
09150 Organismal Systems
09158 Development and regeneration
04382 Cornified envelope formation
108733043
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
apln04147
]
108733043
00536 Glycosaminoglycan binding proteins [BR:
apln00536
]
108733043
Exosome [BR:
apln04147
]
Exosomal proteins
Exosomal proteins of other cancer cells
108733043
Glycosaminoglycan binding proteins [BR:
apln00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
108733043
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Collagen
C4
Motif
Other DBs
NCBI-GeneID:
108733043
NCBI-ProteinID:
XP_025829409
UniProt:
A0A7F5R2W0
LinkDB
All DBs
Position
Unknown
AA seq
1817 aa
AA seq
DB search
MTGLGLRHVASILGLVTYVSAQYFQYFPTANRTSFNSTGGYRNNRKHYENYRRPEVPENT
NRNPYNNIYGNYESKSYLNNVSPSTGSGSSSYDILDVLNPSQNRNEKCIPKCFAEKGDRG
LQGEQGPPGERGFPGYPGPEGVMGPKGQKGDPGPPGPWGPKGDRGRTGVPGFTGISGLPG
LPGPVGPPGIPGVDGCNGTDGLPGLPGEPGEPGPRGFPGVAGVRGDKGEPAHCEITLKGQ
KGEPGLNGVPGIPGPPGPSGIAGLPGDKGEDGLPGPRGPPGLKGPKGHMGVGIDGPKGEK
GQKGSTGPKGDSHTYQIGSNTTFVVKGAKGDKGDLGDFGPKGQKGEVGPEGDYGLPGPIG
SKGEKGLPGAPGSRGRDGFPGPPGPIGQKGDRGSDGLPGLSGRPGGKGEPGRDGPMGAPG
LRGPPGPPGGGKGRPGPPGPAGPRGYPGPIGPKGMDGFPGEPGPRGPPGPLGGPGEPGRP
GLEGPPGDKGQKGESGSIGFPGGEGPRGFPGPPGPEGPRGFPGEKGLSIIGPKGYDGLPG
KDGEKGQKGERGYPGARGIPGDALEGIHGAPGVPGLPGEKGIAGRPGIPGQPGHTGEKGD
KGGQCTDCLPGSRGPKGDRGFDGTPGTPGPRGPPGEMGFPGEPGADGLPGLSGPPGQRGN
DGYNGPPGVPGEKGEAAMIPDSLIVIPKGDKGERGFPGPPGPVGPVGPQGLPGPSGLPGF
PGQKGDTGFPGVPGSDGRDGNPGIPGVKGEKGLSIKGEQGYPGIPGVKGNKGEPGREGVK
GTPGQCPEIPQALRKGARGLPGDKGEPGPQGVAGLPGEPGRRGLPGENGPPGQNGLPGPV
GPRGLPGPRGEKGDVGPMGFPGEPGKDGPRGFPGRDGPRGDKGEPGIPTPGPRGLPGPMG
PKGEKGLIGFPGKPGANGSPGLTGLMGEKGDVGPPGLNGLPGHPGDKGDTGPMGPPGLPG
IGGRPGLDGPKGEPGIKGEEGRRGVPGFPGIKGEPGVIGIDGPKGFPGPRGFPGPEGQAG
KDGTPGLPGDKGDRGYPGAPGFPGIAGLMGPPGPQGEKGDVGYPGPPGPMGRPGQDGDKG
DAGFNGPPGPKGEPGDVSEKGQKGEPGIPGLRGSAGLPGRNGIPGDKGEQGLPGIGIPGI
PGDKGDYGLPGFDGIPGSTGDKGDRGLPGFPGPKGDTGFPGQRGEPGLAGMDGVPGDKGD
LGFPGPAGFPGLKGDAGLPGRDGLNGPKGEAGLPGPPGPFGPPGPVGVPGDRGPPGPVLT
VKGSKGEIGPPGLFGESGERGSPGEDGLPGLPGEKGDQGFPGPKGNAGFPGLPGMKGDRG
FPGPEGRPGNTIKGEKGLPGLPGKHGRDGIPGTSGEKGDRGLPGLPGIAGSPGLPGPVGQ
QGEKGDRGFPGIPGPPGRDGAPGKDGLDGIPGLPGDKGDIGPPGFAGAPGQKGDRGLTGL
QGPPGRPGPKGDRGFDGIPGAPGLPGPIGDKGFPGPQGPVGLQGHVGEKGDKGEAALPGR
PGPKGNRGPPGLAGLPGEIGPPGLDGPPGFPGPPGEKGFPGRNGAPGPVGPQGPKGDRGF
DGIAGAIGPRGEPGPIGQPGAPCEQTPDYLTGILLVRHSQSIEVPSCEPGHIKLWEGYSL
LYIEGNEKAHSQDLGHAGSCVRKFSTLPFLFCDFNNVCSYANRNDKSYWLSTTAPIPMMP
VEETAIRDYISRCVVCEAPANVIAVHSQSLTLPECPVGWTSLWIGYSFTMHTAAGAEGGG
QGLSSPGSCLEDFRASPFIECNGAKGTCHYFADSLSFWLATIDESQQFQVPQKQTLKAGN
VRDRVSRCQVCIKTTRT
NT seq
5454 nt
NT seq
+upstream
nt +downstream
nt
atgaccggcctggggttgcggcatgtagcatccattttggggttggtgacatacgtgtca
gcgcaatattttcaatattttccgactgcaaatcggacttcgttcaattcgacagggggg
tataggaataacaggaaacattacgaaaattatagaagacctgaggtgccagaaaatacc
aacaggaatccttacaataatatttacggcaattacgaatcaaaaagttatttaaataat
gtatcaccatctactggtagtggaagcagcagctatgatatattagatgttttaaatcca
tcgcagaaccggaacgaaaaatgcattcctaagtgttttgcagagaagggagataggggt
ttgcaaggtgaacaaggacctcccggagaaagaggatttcccggttatccaggaccggaa
ggagttatgggaccgaagggccagaaaggagatccaggaccgccgggtccttggggaccc
aagggtgacaggggaaggacaggtgtgcctggcttcacaggaattagtggtcttccagga
ttgcctggtcctgttggaccaccaggtataccaggagtggatggatgtaacgggacagat
ggattaccggggcttcctggagagcctggagaacctggtcctcgtgggtttccaggagtt
gcaggagtgagaggcgataagggagaacctgcacattgtgaaataactctaaagggtcaa
aaaggagaaccaggtttaaatggagtaccgggaattcctggaccacccggaccaagcggt
attgccggtcttcctggagataaaggcgaagatggattgccaggtcctagaggtcctccg
ggattaaaaggtcctaaaggacatatgggtgttggtattgatggcccaaaaggcgagaaa
gggcaaaagggttctactggtcccaagggcgattcgcatacctatcaaataggaagtaac
acaacgttcgtggtaaaaggagctaaaggggataagggcgacttgggtgatttcggaccg
aagggacaaaaaggcgaagtaggaccggaaggggactatggacttcctggtccaataggt
tcaaaaggagaaaaaggtttacctggtgctccaggatcgagaggtcgtgatggatttccc
ggtccacctggtcccatcggtcaaaaaggtgacagaggctcggacggattaccaggattg
tcaggtaggccaggtggaaaaggagaacctggacgagacggtcctatgggagctccaggt
ttaagagggccacccgggccacctggaggtggtaaaggtcggccaggtccaccaggacct
gctggtccaagaggctatccaggtccaataggaccgaaaggcatggatggctttcctgga
gaacccggaccccgaggaccccctggtcctttaggaggacctggagaaccaggaagacca
ggtcttgaaggaccaccgggcgataaaggtcaaaagggagaatctggttcgattggtttt
cctggtggtgaaggcccacgtggttttccaggaccaccaggaccggaaggtcctagagga
tttccaggagaaaaaggattatctataatcggtccaaaaggatatgatggattgccaggt
aaagacggcgagaaaggtcaaaaaggagaacgtggttatcctggtgccagaggtatacca
ggcgatgcactggaaggtattcatggagctcctggtgtgccggggttgcctggagaaaaa
ggaatagcagggcggcctggaattccgggacaaccaggacatacgggagaaaagggagac
aagggtggtcaatgtacagactgtttgcctggatcaagagggccaaagggtgatagagga
tttgacggaacccctggaacgccagggccacgaggaccacccggtgaaatgggcttcccc
ggagaaccaggtgctgacgggttaccaggattgtcggggcctccaggccaacgaggaaat
gacggttacaacggacctccaggagtaccaggagagaaaggtgaagcagcaatgattcct
gatagtttgatagtaataccaaaaggagacaaaggtgaaagaggctttcctggaccacct
ggtccagtaggacccgtcggtccacaggggctgccaggacccagtggcttacctgggttc
ccaggtcaaaaaggtgacactggctttcctggagtacctggaagtgatggcagagacgga
aacccaggtataccaggtgtcaaaggagaaaaaggattaagcatcaagggtgaacaaggt
tatccaggaataccaggcgttaaaggaaataaaggcgaacctggacgagagggcgtaaag
ggaacgccaggccagtgccccgaaattccacaagcacttcgaaagggtgccagaggtttg
cctggggataaaggtgaacctggcccgcaaggagttgcaggcttaccaggagaaccgggt
agaagagggcttcctggcgaaaatggaccacccggtcaaaatggtcttcccggacctgtt
ggacctagaggactaccaggaccaaggggagaaaaaggagacgtgggccctatgggattt
ccgggagaacccggtaaagatggaccaagaggattccctggacgtgatggaccaagaggc
gataaaggagaacctgggattcctactcctgggccccgtggtttacctggcccaatggga
cctaaaggtgaaaaaggtttaataggttttcctggaaaacctggagcaaacggaagtcct
ggtttaactggattaatgggtgaaaaaggtgacgtgggtcctcctggattaaatggcttg
cctggacatccgggagataaaggagatacaggaccgatgggacctccagggcttccgggt
attggtggccgacctggcttagacggccctaaaggtgaaccaggaataaaaggagaagag
ggaaggcgcggggtacccggctttccgggtattaagggtgaaccaggggtgataggtatt
gatggtccgaaaggctttcctggtcctcgcggatttccgggtcccgaaggccaagcaggt
aaggatggtacaccaggccttcctggcgacaaaggcgatcgaggataccctggggctccc
ggatttcccggtattgctggtcttatgggtccaccaggtccacaaggtgaaaagggagat
gtcggttaccccggacctccaggaccaatgggaagacccggacaagacggggacaaaggc
gatgcaggttttaacggaccgccaggtccaaaaggggaacctggcgatgtttctgagaaa
ggccagaaaggcgaaccaggaattcctggcttaagaggttcagctggtttaccaggcaga
aacggaatacctggagataaaggagaacaaggattaccaggaataggaattcccggaata
ccaggagataaaggagactatggattgcctggatttgatggcatacctggttccacagga
gacaagggcgacagggggttacctggctttcctggacctaagggtgatactggttttcct
ggacagagaggtgaacccggtttggctggcatggacggagtaccaggggataaaggcgac
cttggatttcccggaccggctggttttcctggtctaaaaggtgacgctggtcttcctgga
agagacggattaaacggacctaaaggtgaggctgggctacctggaccccccggtcctttt
ggtccaccaggacctgttggagtaccaggtgatcgcggtccaccgggaccagtacttact
gttaaaggaagtaaaggagagattgggcctcccggattatttggagaaagtggcgaaaga
ggtagtccgggagaagacggtttgcctggtctaccgggagaaaagggagatcaaggtttt
ccaggacctaaaggaaacgcagggttccctggattaccaggaatgaaaggcgacagagga
ttccctggtccggaaggacgacctggcaatactataaagggcgaaaaaggcttaccaggg
ttgccaggaaaacatggtagagacggaatacctggaacttcgggagaaaaaggtgatcga
ggtttgcctggtttacctggtatagctggaagtccaggattgcccggaccagttggacaa
cagggagaaaaaggagatcgcggttttccagggattccgggtccaccaggaagagatggc
gctcctggaaaggatggcttagatggtattccgggattaccaggcgataagggagatata
ggaccaccaggattcgcaggagctcccggacaaaaaggggacaggggactcacagggtta
caagggcctcctggaagacctggacctaagggcgatagaggatttgatgggattccaggt
gcacctggacttcctggtcccatcggcgacaaaggatttcccggacctcaaggtccggta
ggcttacagggacatgttggagagaaaggcgataaaggtgaagctgcgttaccaggaaga
cctgggccaaaaggaaatagaggtcctcccggtcttgctggattaccaggagaaataggt
ccacctggattggatggccctccaggttttccgggaccacctggagaaaaaggattccca
ggaagaaacggagctcccggtcctgtaggtcctcaaggtcctaaaggagatcgtggtttc
gatggaatagctggtgctatcggccctaggggagagccgggtccgattggtcaaccggga
gctccctgtgaacagacgccggactatctgacaggaattttgctagtaaggcacagtcaa
tcgatagaagtgccgtcgtgcgaaccgggacatataaaattatgggaaggatattcgtta
ctctacattgaaggaaacgagaaagcacattcgcaagacttgggtcatgctggttcatgc
gttaggaaattttcgacattgccgttcctattctgcgactttaacaacgtgtgcagttat
gcaaatcgaaacgacaaatcttattggttgtcaacaaccgctccaataccaatgatgccg
gtagaggaaacggccataagagattacatttcccgatgtgtcgtttgcgaggctcccgct
aacgtgatcgcagttcacagccagtctctaactctacccgagtgtccggttggttggacc
agtttgtggataggctacagtttcacaatgcacactgccgccggtgccgaaggaggtggc
caaggtctatctagcccaggatcgtgtctggaagatttccgcgcttcgccgttcatagaa
tgcaacggggctaagggaacttgccactatttcgccgattcgctaagtttctggttggca
acgatcgacgagagccaacaattccaggtaccacagaaacaaacgttaaaggctggtaat
gttagagaccgcgtgagcaggtgtcaagtttgtataaaaacgacaagaacataa
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integrated database retrieval system
