Agrilus planipennis (emerald ash borer): 108733568
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Entry
108733568 CDS
T07419
Name
(RefSeq) tRNA-splicing ligase RtcB homolog
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
apln
Agrilus planipennis (emerald ash borer)
Brite
KEGG Orthology (KO) [BR:
apln00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
apln03016
]
108733568
Enzymes [BR:
apln01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
108733568
Transfer RNA biogenesis [BR:
apln03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
108733568
Prokaryotic type
tRNA splicing ligases
108733568
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RtcB
Motif
Other DBs
NCBI-GeneID:
108733568
NCBI-ProteinID:
XP_018320258
UniProt:
A0A1W4WJG3
LinkDB
All DBs
Position
Unknown
AA seq
506 aa
AA seq
DB search
MVVRKFEEELKYMEKLNPYCWKIKKGFQPNMNVEGVFYVNSTLEKLMLDELKNACRPGMT
GGFLPGVKQIANVAALPGIVGKSIGLPDVHSGYGFAIGNMAAFDMNDPNSVVSPGGVGFD
INCGVRLLRTNLFENDVAPVKEQLAQSLFDHIPVGVGSKGIIPMNARDLEEALEMGMDWS
LREGYVWAEDKEHCEEYGRMLNADPNKVSFRAKKRGLPQLGTLGAGNHYAEIQVVDEIYD
KWAACKMGIEEKGQVCVMIHSGSRGFGHQVATDALVQMEKAMSRDKIETNDRQLACARIN
SQEGQDYLKSMAAAANFAWVNRSSMTFLTRQAFAKQFQTTPDDLDMHVIYDVSHNIAKVE
EHVVDGKLKTLLVHRKGSTRAFPPNHPLIPVDYQLTGQPVLIGGTMGTCSYVLTGTEQGM
IETYGSTCHGAGRALSRAKSRRNLDYTDVLAKLEEMGISIRVASPKLVMEEAPESYKNVT
DVVNTCHSAGISKKCIKLRPIAVIKG
NT seq
1521 nt
NT seq
+upstream
nt +downstream
nt
atggtagtacgaaagttcgaagaagaattgaagtacatggaaaaactaaatccatactgc
tggaaaattaaaaaaggctttcagcccaacatgaatgtggaaggcgtattttatgttaac
tcaacgttggaaaaattaatgttagatgaactgaaaaatgcttgtagacctggcatgact
ggaggttttttgccaggagttaaacaaatagcaaatgttgctgctcttccaggtattgtt
ggaaagtctataggacttccagatgttcattctggatatggctttgccataggtaacatg
gcagcatttgatatgaatgaccctaattcggtagtttcaccaggaggtgttggtttcgac
atcaattgtggtgtaagattacttcgtacaaatctttttgaaaatgatgttgcacctgta
aaagaacagttggctcagagtctgtttgatcacattcctgtaggagtgggttcaaaaggt
ataattccaatgaatgctagagatttggaagaagctttagaaatgggcatggattggtca
cttcgtgaaggatatgtttgggcagaagataaagagcattgtgaggaatatggtcgtatg
ttaaatgcagatccaaataaagttagttttagggcaaaaaaaagaggattaccacagttg
ggaactttgggtgctggtaatcattatgcagaaatccaagtagtagatgaaatttatgac
aaatgggctgcatgcaaaatggggattgaagaaaaaggccaagtttgtgtaatgatccat
tccggaagtagaggatttggacatcaagttgcaacagatgcattagttcagatggagaaa
gcaatgagtcgagacaaaatagaaacaaacgatcggcaactagcttgtgccaggattaac
tctcaagaaggacaagattatttaaagtccatggctgctgctgctaattttgcatgggtt
aacagaagttccatgactttcttaactagacaggcatttgccaaacaatttcaaacaact
ccagacgatttagacatgcacgtgatatacgatgtatctcataacatagcaaaagttgaa
gaacatgttgtagatggtaaattaaagacacttcttgtacatagaaaaggatcgacccga
gcttttccaccaaatcatcctttaataccagtagattaccaattaactggccaaccggta
ctaattgggggaacgatgggtacttgcagctatgttttaacgggtactgagcaaggaatg
atagagacatatgggtctacttgtcacggagcaggtcgagcattatcaagagcaaaatcg
agacgtaatttagattacaccgatgttttggcaaaactggaggaaatgggaatatcaatt
cgagtagcatctccgaagctggttatggaagaggccccagaatcttataaaaatgttact
gacgttgttaatacttgtcactctgcaggaatcagcaaaaaatgcatcaaactaagaccg
attgcagttattaaaggctaa
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