Agrilus planipennis (emerald ash borer): 108734810
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Entry
108734810 CDS
T07419
Name
(RefSeq) 5'-3' exoribonuclease 1 isoform X1
KO
K12618
5'-3' exoribonuclease 1 [EC:3.1.13.-]
Organism
apln
Agrilus planipennis (emerald ash borer)
Pathway
apln03008
Ribosome biogenesis in eukaryotes
apln03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
apln00001
]
09120 Genetic Information Processing
09122 Translation
03008 Ribosome biogenesis in eukaryotes
108734810
09123 Folding, sorting and degradation
03018 RNA degradation
108734810
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
apln03019
]
108734810
03009 Ribosome biogenesis [BR:
apln03009
]
108734810
03016 Transfer RNA biogenesis [BR:
apln03016
]
108734810
03036 Chromosome and associated proteins [BR:
apln03036
]
108734810
Messenger RNA biogenesis [BR:
apln03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Common to processing body (P body) and stress granule
108734810
mRNA degradation factors
5'-3' decay
5' exonucleases
108734810
Ribosome biogenesis [BR:
apln03009
]
Eukaryotic type
Pre-60S particles
RNases
108734810
Transfer RNA biogenesis [BR:
apln03016
]
Eukaryotic type
tRNA degradation factors
Rapid tRNA decay (RTD) pathway factors
108734810
Chromosome and associated proteins [BR:
apln03036
]
Eukaryotic type
Gene silencing
piRNA pathway
108734810
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
XRN_N
XRN_M
XRN1_D2_D3
XRN1_D1
SH3_12
Dicer_dimer
dsrm
Motif
Other DBs
NCBI-GeneID:
108734810
NCBI-ProteinID:
XP_018322000
UniProt:
A0A1W4WPN4
LinkDB
All DBs
Position
Unknown
AA seq
1693 aa
AA seq
DB search
MGVPKFFRYISERYPCLSEVVKEYQLPEFDNLYLDMNGIIHTCSHPDDGDPHFRITEEKI
FRDIFHYIEVLFRMIKPQKLFFMAVDGVAPRAKMNQQRGRRFRTAKEALELEQKALAKGE
KLPTQARFDSNCITPGTEFMVKLQEQLKYFIVTKISTDPLWQKCKIVLSGHETPGEGEHK
IMDYIRYMRSQPGYDPNTRHCLYGLDADLIMLGLCTHEPHFSLLREEVKFGKKSTRRKNI
PEQMTFFLLHLSLMREYLELEFLPLQKDLPFPYDLERIIDDWVLMGFLVGNDFIPNLPNM
HIANGALPVLYKAYMKALPKLGGYINESGTLNLERFEEFMKELAEIDIENFSDQYADLKW
FEAKTGRDFNGKEKNEKVLIPFELEDKPEINNVEEKSNNVEKKSENDIEIKNESIEKDKN
VTGNGEIALGNNASSENGVVENWEDRLDESDTSDSDNDLFLAEFKQHKTDYYMNKLEYEQ
VTQEVLKAQAEGYVRAIQWNLHYYYNGVCSWSWYYPHHYAPYVSDIQGFKDLKLKFDLGK
PFKPFEQLLAVLPSASKNLLPEAYQDLMTKEDSPLKKYYPENFQTDLNGKRQEWEAVVLI
PFIDEKILLEGMEQCNERLSPDEKQRNSHGPMLIYEYSVDDTGRYEAPDYFPALAVSHAK
CTKVPIENIRVPMDKLIKGSYPGVKMDVFYPGFPTMKHLEYTAVLGKAKVKVFEQASRNE
NMIVSIVPKKDVPAIDVLAKKMLGSVVYVSWPHLVEALVVSISNEEYRYIAASEKGQYNV
EENKGNSLTVWRSQVRGITQYYMSRLGINVGETQVLVHVRVMIGRKYAFTPQGRVNLEKQ
WAVIESAYPLQAVVQNIAVYEKKYEMYKSIGNIFSVGTKCFMLGQPYYGAVGEVLESKES
LKNVRIKVDMKKTDEPDFTEAKDLAHEIATRYIPLQVAAAKLSISKSLFSRITGCIFVIP
TGYRNIPMESNELPKINIGLNLKLTKKNEEIPGYTRKDANTWMYSEKAVALVENYLQRFP
TLVQYLNQNQGNDVYFEEDIYPDGDGKEQIKEITAWIKKQPFYSVERQVCGSIGLYPDVI
KKIEEIIDKFKKRSKIRKVVMEVKPHLLYVVGLQIGNLMPDPTTTFLLYDRVVNIRESYT
VPVGLKGTIIAVRKPQDASDEDTMYDVLFDEEFSGGLELNCLTPRAYRLPRSAMINISHG
ERMLNQKTGVVPGQLLQNLNTDPQYHKNYYMQNGAISRPSGHFRPSSASPYQQWGFPNSP
VSNYGNFRPPLLYNNNGPSLIPPQQCGHPRFHIVPYDVRNNGGPYPPKPSFVPSTQQQSS
VDHPPSKSGPSFGSSISMQNCHNFMPGFAKGSSPGKHFYEQKRVKGAPLSYNTQNNITST
PSGSSTAMREPMQVTKEEHPRPSTKVDTELLKKMLRINEGANQRIPVTAFKQTPVKEIEK
PSKLEQSTPLNVQDIFAHARNKAQTLSDNAFSTAKLLNYYKSLDLGCPRYQFFELPKKMF
QAQITLPDGSVVSGNACQSKENACDSAAAEALKILTRDNKVEESHTLRIQKQTEVLQRKA
ENDKTVREKVHKEKKIERSGNVEFNKKKDSTNLETSNNTVNNSGSKGQRQVLSVNSFVPL
QAIRNRTKSGSNRSVESNTTANLTVTENKNKLKEDDQETEKCVTSQSSKGAPMRRRGERK
MRIAANFQATGKR
NT seq
5082 nt
NT seq
+upstream
nt +downstream
nt
atgggtgttccgaaattttttagatatattagtgaaagatatccgtgtctaagtgaggtt
gtgaaagagtaccagctgccggaatttgataatttatacctggatatgaatggaattata
catacttgctcacatccagacgatggagacccacattttcgtattacggaagaaaaaata
ttcagagatatttttcactatattgaagtactctttcgaatgataaagccacagaaatta
ttctttatggcagttgacggagtagctcccagggcaaagatgaatcagcaacgtggtcgt
agatttaggacagcaaaagaggcattagaattggagcagaaagctttagcaaaaggagag
aaacttccgacacaagccagatttgattcaaactgtataacaccaggaactgaatttatg
gtcaagttgcaagaacaattaaaatatttcattgttactaagatttctacagatccattg
tggcaaaagtgtaaaattgttttatctggacatgagactccaggtgaaggagaacataaa
attatggactatatcaggtatatgagatctcaaccaggttatgatccaaatactagacat
tgcctgtatggtttagatgctgatcttataatgctaggtttatgcacccatgaaccacat
ttctcattacttcgagaggaggtaaaatttggtaaaaaatctacaaggcggaaaaatata
cctgaacagatgacattttttttacttcacttatccctcatgagggaatatttagaatta
gaatttttaccattacaaaaagatttaccattcccatatgatttggaacggatcatagat
gattgggttttaatgggatttttagtgggtaatgattttattcctaacttgccaaatatg
catatagcaaatggagctttacctgttttgtacaaggcttacatgaaggcgcttccaaaa
ttagggggatatatcaatgaaagtggcactttaaatttggaacgatttgaagaatttatg
aaagaacttgctgaaattgatatcgaaaatttttctgaccagtatgctgatctgaaatgg
tttgaggcaaaaactggtagagattttaatggcaaggaaaagaatgaaaaagttttgata
ccatttgaattagaagataaaccagaaataaacaatgtcgaagaaaaatcaaataatgta
gaaaagaaatcagaaaatgacattgaaataaagaatgaatctattgaaaaagataaaaat
gttactggtaacggtgaaattgcactaggcaataatgctagttctgaaaatggtgttgta
gaaaattgggaagaccgattggatgaatcagatacgtcggactctgataatgatcttttc
ttagctgaattcaaacaacacaagactgattattacatgaataagttagaatatgaacaa
gtaactcaagaagtattaaaagcccaagctgaaggttatgttagagccattcagtggaat
ttacattactattataatggagtttgttcatggtcctggtattatcctcatcactatgct
ccatatgtttctgacattcagggttttaaggatttgaagttgaaatttgatctgggaaaa
ccttttaaaccttttgaacaactcttggcggttcttccatcggccagtaaaaatcttctt
ccagaagcttatcaggacctgatgaccaaagaagattctccattaaaaaagtactatcct
gaaaattttcagacagatttgaacgggaaaagacaagaatgggaagcggttgttcttata
ccatttattgatgagaaaatattactagaaggaatggaacagtgtaatgaaagactaagt
ccggatgaaaaacaacgtaatagtcatggtcccatgttaatttacgaatattccgttgat
gataccggtagatatgaagcacctgattatttccctgccttagcagtatcacatgctaaa
tgtaccaaggtaccgatagaaaatatccgagttccgatggataaattaatcaaagggtca
tacccgggtgtgaaaatggatgtattttatcctggttttccaactatgaaacacttggag
tatactgcagttttaggcaaggcaaaggtaaaggtatttgaacaagcaagtagaaatgaa
aacatgattgtaagtattgttccaaaaaaagatgtgcctgcaattgatgttttggccaag
aaaatgctgggtagtgttgtatatgttagttggcctcatcttgtggaagctctggttgta
tccatttccaatgaagaataccgttacattgctgcaagcgaaaaaggtcaatacaacgtt
gaagaaaataaaggtaattctttaaccgtttggagatctcaagtcagagggataactcaa
tattacatgagccgtttgggaataaatgtaggtgaaacacaagttttggttcatgtgagg
gtaatgattggtcgaaaatatgccttcaccccacagggtcgtgttaatttggaaaaacag
tgggcagtaatcgaaagcgcgtaccctttacaagcagtggtccaaaacatagctgtatac
gaaaagaaatatgaaatgtacaaaagtattggaaacattttttctgtaggaacaaagtgt
ttcatgctaggacaaccttattatggagctgttggtgaagtacttgaaagtaaagaatct
ttgaaaaatgttcgaataaaagtagatatgaaaaagactgatgaaccagatttcaccgaa
gcaaaagatttggctcatgaaatcgcaacccgatatatacctttacaggttgctgctgca
aaattatcaatttcaaagagtctgttttcgcgaataactggatgtatcttcgtcattccc
actggctaccgaaatatccctatggagtctaatgaattgccaaaaataaatattggacta
aatctaaaactgactaagaaaaatgaagagatacctggatataccagaaaagatgccaac
acgtggatgtactcggaaaaagcagtcgccctggttgaaaattatttgcaacgtttccct
actttggttcaatatttaaatcaaaaccaaggaaatgacgtatattttgaagaagatatc
tatcctgatggtgatggaaaggagcaaataaaagagataacggcatggattaaaaaacaa
ccgttctattcggtcgagaggcaagtctgtggtagtataggactttatccggacgtgatt
aagaaaatcgaggaaataatcgacaaatttaagaaaagatctaagattaggaaggttgtc
atggaagtgaaaccacaccttctttatgtggttggtcttcaaattggaaatctaatgcct
gacccaactaccacgtttttattatacgacagggtggtaaacattcgggaaagttatacc
gttcccgttggattgaaaggaacgattattgccgtccgaaaaccacaagatgcaagtgat
gaagacacgatgtacgacgttttgttcgatgaagaattttctgggggtttggagcttaat
tgtttgactcccagggcatacaggttacctaggtctgcaatgattaatatatcacatggt
gaaaggatgttgaatcagaaaacgggagtagtcccaggtcagttactgcaaaatttaaac
actgatccacaatatcataaaaattattacatgcaaaatggagccatatctcgccccagt
ggccattttcgaccttctagtgcaagcccatatcaacaatggggcttcccaaactctccc
gtatccaattatggtaattttcggcctccacttttgtacaacaataacggtccttcgctt
attcctcctcaacaatgtggccatcctcgtttccatattgtcccttacgatgtaagaaat
aatggagggccgtatcctccaaagccatcttttgttccttctactcagcaacaatctagc
gttgaccatcctccttccaaaagtggaccatcttttggttcatccatatccatgcaaaac
tgtcacaactttatgccgggattcgctaaaggatcgtcgccagggaaacatttttatgag
cagaaacgggtgaaaggggctcccttatcttataacactcaaaataatataacatcaact
cccagtggatcaagtacagcaatgcgagaacctatgcaagtgactaaagaggaacatcct
aggccctcgaccaaggtggatacagaacttttaaaaaaaatgcttcgaataaacgaagga
gcaaaccagcgtattcctgtaactgcatttaaacaaactcctgtcaaagaaatagaaaaa
ccttcaaaattagagcagtcaactcctttaaatgttcaggatatatttgctcatgccaga
aataaagctcaaaccttatctgacaacgccttttccacagctaaacttttaaattattat
aaatctttggacctgggttgtcccagatatcagttctttgaactgcccaagaaaatgttc
caggcacagattactcttcctgatgggagcgttgtctctggaaatgcctgccaatctaaa
gaaaacgcttgcgatagtgctgctgcggaagcgttaaaaattttaacaagggacaataaa
gtagaggaatcgcacactttacgcatacaaaagcagacagaagtattacaaagaaaagcg
gaaaatgataaaacagtcagggaaaaggtacataaggagaaaaaaatagaaagaagtggt
aatgtggaatttaacaaaaaaaaagatagcaccaatttagagacaagtaacaacaccgtg
aacaacagcggtagtaaaggccagaggcaagtactatctgtcaacagtttcgtgccactt
caagcaattagaaatagaacaaagagtggaagtaatagaagtgttgaaagtaatacaact
gccaatttaacggtgacagagaacaaaaataaactaaaagaagacgaccaagaaactgaa
aaatgtgttacaagtcagagctcaaagggagcaccaatgcgacgtagaggagaaagaaaa
atgagaatagccgccaattttcaggcgactggtaaacgataa
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