Agrilus planipennis (emerald ash borer): 108736021
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Entry
108736021 CDS
T07419
Name
(RefSeq) putative pre-mRNA-splicing factor ATP-dependent RNA helicase PRP1
KO
K12820
pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15/PRP43 [EC:
5.6.2.6
]
Organism
apln
Agrilus planipennis (emerald ash borer)
Pathway
apln03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
apln00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
108736021
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
apln03041
]
108736021
03009 Ribosome biogenesis [BR:
apln03009
]
108736021
Enzymes [BR:
apln01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
108736021
Spliceosome [BR:
apln03041
]
Complex A
U2 snRNP components
U2 related factors
108736021
Complex B
108736021
Complex C
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-SnRNP related factors
108736021
Ribosome biogenesis [BR:
apln03009
]
Eukaryotic type
90S particles
Helicases
108736021
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
HA2_N
Helicase_C
DEAD
AAA_19
AAA_22
nSTAND3
SRP54
ResIII
ATPase
Flavi_DEAD
AAA_25
T2SSE
AAA_30
TsaE
ABC_tran
Motif
Other DBs
NCBI-GeneID:
108736021
NCBI-ProteinID:
XP_018323785
UniProt:
A0A1W4WUR4
LinkDB
All DBs
Position
Unknown
AA seq
715 aa
AA seq
DB search
MSKRRIDIVDPFIKKKREERGVPTTIVTTPVLNSSINTLTGLPYTQRYHELYRKRINLPV
FEYKADFMRLLHEHQCIVLVGETGSGKTTQIPQWCVEYARSVGKKGVCCTQPRRVAAMSV
AQRVSEEMDVALGQEVGYSIRFEDCSSAKTILKYMTDGMLLREGMSDPMLDAYQCILLDE
AHERTLATDILMGVLKEVIKQRSDLKLVIMSATLDAGKFQQYFDNAPLMNVPGRTHPVEI
FYTPEPERDYLEAAIRTVIQIHMCEDIAGDILLFLTGQEEIEVACKRIKREIDNLGPEVG
ELKCIPLYSTLPPNLQQRIFEEPPPNKANGAIGRKVVVSTNIAETSLTIDGVVFVIDPGF
AKQKVYNPRIRVESLLVSPISKASAQQRAGRAGRTRPGKCFRLYTEKAYKNEMQDNTYPE
ILRSNLGSVVLQLKKLGIDDLVHFDFMDPPAPETLMRALELLNYLAALDDDGNLTDLGAV
MAEFPLDPQLAKMLIASCNHNCSNEILSITAMLSVPQCFVRPNEAKKAADDAKMRFAHID
GDHLTLLNVYHAFKQNMEDPQWCYDNFINYRSLKSADNVRQQLSRIMDRFNLKRTSTDFS
SKDYYINIRKALVNGFFMQVAHLERTGHYLTIKDNQMVQLHPSTCLDHKPEWVIYNEFVL
TTKNYIRTVTDIKAEWLLKIAPQYYDLQNFPQCEAKRQLEVIQNRLESRQYQQGF
NT seq
2148 nt
NT seq
+upstream
nt +downstream
nt
atgtcaaagagaagaattgatattgttgatccttttataaaaaaaaagcgggaggaacgt
ggtgtacctactaccatagttacaactcctgtactgaactcttcaataaacacgcttact
ggtttgccatatactcaacgttatcatgaactttacagaaaacgtatcaatttacctgtt
tttgaatacaaggcagattttatgcgtttgctacatgaacaccagtgtattgtactagtt
ggagaaacaggttctgggaaaacaacacaaattcctcaatggtgtgttgaatatgctaga
tctgttggaaagaaaggcgtttgctgcacgcagcctagaagagtagctgcaatgtctgta
gcacaaagggtttcagaagaaatggatgttgcattaggtcaagaagttggttacagtata
cgttttgaagactgttcatcagcaaaaacaattctgaagtatatgactgatggtatgtta
ttgcgagaaggaatgagtgatcccatgctagatgcatatcagtgtatattactggatgaa
gctcacgagagaacattagctactgatattcttatgggcgttcttaaggaggttatcaag
caacgttctgatttgaaattggtaattatgtctgctacattggatgctggtaaatttcag
cagtattttgataatgctccattgatgaatgtaccgggtcgtacacatcctgttgaaata
ttttatacaccagaacctgaaagggactatctagaggctgctataagaactgttatacaa
atacacatgtgtgaagacattgctggagacattttgctatttttgacaggacaagaagaa
attgaggtagcctgtaaaaggattaaaagagaaatcgataatttaggacctgaagtgggt
gaattaaagtgcatcccactatattcaaccctaccacctaacctacagcagcgcatcttt
gaagaacctcctccaaacaaagcaaatggtgcaattggacgaaaagttgttgtttcaaca
aatattgctgaaacatcccttacaattgatggagtggtattcgtaattgaccctggattc
gctaaacagaaggtgtataaccctcgaatacgcgttgaatcattacttgtatctccaatc
agcaaagcctctgcccaacagcgagctggaagagctggaaggacgagacctggtaaatgc
tttaggttgtacactgaaaaggcctataaaaacgaaatgcaagataacacttatcctgaa
atattaaggtcaaacttgggttcagttgttcttcagttaaaaaagttgggtatcgatgat
ttggttcactttgattttatggatccacctgctccagaaaccctaatgcgagcattggaa
ctgcttaattatcttgctgcccttgacgatgacggaaatttaactgacttaggagctgta
atggccgaatttccgctcgatccgcaattggccaagatgcttattgccagctgcaaccat
aattgctctaatgaaattttgtcaataacagcaatgttgtcagtcccgcagtgttttgtc
cgaccgaacgaggcaaaaaaagcagccgacgatgccaagatgcgattcgcacacatcgat
ggtgaccatcttacccttctcaatgtttatcatgcattcaaacagaatatggaagatcca
caatggtgttacgataacttcatcaactatcgctcacttaagtcagcagataatgtcagg
caacagttgtcgcgcataatggatagatttaatttgaagagaacatccactgacttcagc
agcaaagattattacattaacataagaaaagctttagttaatggatttttcatgcaggtg
gctcatctagaaagaacaggccattacttgacgattaaagataatcaaatggttcagttg
catccttctacttgtctcgatcataagccagagtgggtcatttataacgaatttgtttta
acaacaaaaaattacattagaactgttactgatattaaagccgaatggctattgaaaata
gctccacagtattatgatctacaaaattttcctcagtgtgaggcaaaacgacaacttgaa
gttattcaaaatcgtttggaatctaggcagtaccaacaaggtttttaa
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