| Entry |
|
|---|
| Name |
(RefSeq) general transcription and DNA repair factor IIH helicase subunit XPD isoform X1
|
|---|
| KO |
|
|---|
| Organism |
apln Agrilus planipennis (emerald ash borer)
|
|---|
| Pathway |
|
|---|
| Brite |
KEGG Orthology (KO) [BR:apln00001]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
108736506
09124 Replication and repair
03420 Nucleotide excision repair
108736506
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:apln03021]
108736506
03036 Chromosome and associated proteins [BR:apln03036]
108736506
03400 DNA repair and recombination proteins [BR:apln03400]
108736506
Enzymes [BR:apln01000]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
108736506
Transcription machinery [BR:apln03021]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
108736506
Chromosome and associated proteins [BR:apln03036]
Eukaryotic type
Centrosome formation proteins
Spindle formation proteins
108736506
DNA repair and recombination proteins [BR:apln03400]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
108736506
|
|---|
| SSDB |
|
|---|
| Motif |
|
|---|
| Other DBs |
|
|---|
| LinkDB |
|
|---|
| Position |
Unknown
|
|---|
| AA seq |
756 aa
MRLSVDGLIVYFPYEYIYPEQYSYMCELKRALDAKGHCLLEMPSGTGKTTTLLSLVVAYM
LEHPHDVRKLIYCSRTVPEIEKVIEELKKLFEYYEKLDSIYPRLIGLVLSSRKNMCVHPQ
VSKEREGKIVDSKCHALTASYVRERHNYDETTPICQYYEGFDMDGKENNIPYGVYSIDDL
KQYGKDRNWCPYFLARFAIIHANIVVYSYHYLLDPKIADVVSKELCKEAVVIFDEAHNID
NVCIDSMSVKINRRIIEGSTANLGLLEKTVAEMREDDVKRLQEEYQRLVDGLRDASVARE
TDVILANPILPDEILSDVVPGNIRNAEHFLSFLRRFVEYLKTRLRVQHVVQESPAAFLKD
VQLKVCIERKPLRFCAERLASLLKTLEISDLTNFGPLVLVTHLATLVSTYTKGFTIIVEP
FEDKAPTVSNPILHFSCLDSSIAIKPVFDRFQTVVITSGTLSPMDMYPKILNFHPVIMSS
FTMTLARPCLLPMIVSKGNDQVAISSKFETREDIAVIRNYGQLLVEVAANVPDGIVCFFT
SYLYLEAVVASWYDQGVIDSLQRYKLLFIETQDSAETSFALMYYIKACESGRGAVLLSVA
RGKVSEGVDFDHHLGRAVLMFGIPYVYTQSRRLKARLDYLRDQFQIRENDFLTFDAMRHA
AQCVGRAIRGKTDYGIMIFADKRFARADKRSKLPKWIQEHLKDSLCNLSTEEAIQILKRW
LRQMAQPFTREDQLGVSLLTLEQLEKLESSKSVKQS |
|---|
| NT seq |
2271 nt +upstreamnt +downstreamnt
atgaggttgagtgtggatggtttaattgtttattttccatatgaatacatatatccagag
cagtattcatacatgtgcgaattaaaaagggctctagatgctaaaggacactgcttattg
gaaatgccctcagggactggtaaaactacaacattgctttctttagttgtagcttacatg
ttggaacatcctcatgatgttagaaagcttatttactgttctcgtactgtgccagaaata
gaaaaagttattgaagaattgaaaaagctttttgaatactatgaaaaactagactctatt
tatccaaggctgattggccttgtgttgagttcaagaaagaatatgtgtgtgcatccacag
gtgagtaaggaaagagaaggaaaaattgtagatagcaagtgtcatgcactaacagcaagt
tatgttcgtgaaagacacaactatgatgagactaccccgatttgtcagtattatgagggt
tttgatatggatggaaaagaaaataatattccctatggagtatacagcattgatgatctt
aagcagtatggcaaggacagaaattggtgcccttattttttagcaagatttgctataatt
catgctaatattgttgtatacagttaccactatttactcgatccaaaaattgctgatgtt
gtttccaaagaactttgtaaagaagcagttgtgatttttgatgaagctcacaatattgac
aatgtttgtatagattctatgagtgtaaaaattaatcgacgaataatagaaggttccact
gcaaaccttggacttttagaaaaaactgttgctgagatgcgggaagatgatgttaaaagg
ttacaagaagagtatcaaagacttgtagatggcttgagagatgccagtgtagcacgagaa
actgatgtgatattagctaatccgattttacccgatgaaatactaagtgacgttgttcct
ggtaacattcgaaacgcggaacatttcttaagttttctcaggcgattcgttgagtattta
aagactcgtcttcgagtgcaacacgttgtccaagaatcaccagctgcatttttgaaagac
gttcaacttaaagtctgtatagaacgtaaaccgttgagattttgtgctgaacgtttagca
tcccttttgaaaacgttggaaatttcagacttgacaaatttcggtcctttagtgctcgtt
actcacttagcaacccttgtttcaacttacacaaagggttttaccataatcgtagaacca
ttcgaagataaagcgcccacagtttcgaaccccatacttcatttttcctgcttggattcc
tccattgccataaaacccgtgtttgatcggtttcaaacagttgtaataacttcgggaacg
ctgtcaccaatggatatgtacccgaaaattttgaatttccatccagttattatgtcttcc
tttacaatgacattagctcggccatgtttactaccaatgatcgtttcaaaaggtaatgat
caggtggcaatttcttcaaaatttgagactagagaagatattgctgtgataagaaattac
ggacaacttcttgttgaggtagctgccaatgtgcctgatggtattgtatgctttttcaca
tcgtatttatatttggaagcagtcgtggccagttggtatgatcaaggggtgatagatagc
ctgcaaaggtacaaactgcttttcatagaaacacaagattctgctgagacaagttttgca
ttaatgtactacataaaggcatgtgaatctggacgaggggcggtgttgttgtcagtagca
agaggtaaagtgtcagaaggagttgattttgatcaccatctcggtagagcggtacttatg
tttggtattccgtatgtgtatactcaatcaaggaggctaaaggctcgactggattactta
agagaccaatttcagattcgtgaaaatgatttcttaacttttgatgcaatgagacatgca
gcgcaatgtgtcggacgagccattaggggaaaaactgattatggtataatgatatttgcg
gataaacgttttgcaagagcagataaaagatccaagctccctaaatggatacaggaacat
ttaaaagattctttatgtaatttatcaacagaagaagcaattcagatattaaagcgatgg
ttaagacaaatggcacaaccgtttacaagggaagatcagttgggtgtttcgttgctaacg
ttggagcaactagagaaattagaatcgagcaagtctgtaaaacaatcataa |
|---|
