Agrilus planipennis (emerald ash borer): 108736811
Help
Entry
108736811 CDS
T07419
Name
(RefSeq) putative U5 small nuclear ribonucleoprotein 200 kDa helicase
KO
K12854
pre-mRNA-splicing helicase BRR2 [EC:
5.6.2.6
]
Organism
apln
Agrilus planipennis (emerald ash borer)
Pathway
apln03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
apln00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
108736811
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
apln03041
]
108736811
Enzymes [BR:
apln01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
108736811
Spliceosome [BR:
apln03041
]
Complex B
U4/U6.U5 tri-snRNP components
U5 snRNP specific factors
108736811
Complex C
U5 SnRNP specific factors
108736811
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Sec63
WHD_SNRNP200
DEAD
Helicase_PWI
ResIII
Helicase_C
BRR2_plug
AAA_30
AAA_22
SWI2_SNF2
Peptidase_C39
Motif
Other DBs
NCBI-GeneID:
108736811
NCBI-ProteinID:
XP_018324896
UniProt:
A0A1W4WLT7
LinkDB
All DBs
Position
Unknown
AA seq
2137 aa
AA seq
DB search
MADAAARQLQYEYKANSNLVLQADVRLIERRSRDEATGEVMSLVGKLLGTKMGDRAQKTK
PVKAEERKAKRQKRDEAQYDFTRMKGATLLSEGIDEMVGIIYKPKTQETRQTYEVLLSFL
QEALGDQPRDILCGAADEILSVLKNDRLKDKEKKKETEALLGSITEERFALLVNLCKKIT
DFGSDETKTIVAGEENIDETYGINVQFEESEEEDDEDMYGEVREELDDDEGEEAREDIAI
HAENLGGVEESKKEKSLHPLDIDAYWLQRQLSKIYDDAMVSQAKAAEVLNVLRDASDDRE
CENQLVLLLGYDCFDFIKVLKKNRQMIYYCTVLAKSQSESERQKLKDRMSDDPALARILR
LLDTGKGDDEDDDESSMRSSRKKDHNDENEAGSGATLPGSRQIIDFEDLVFSQGSHFMAN
KRCQLPDGSFRKQRKGYEEVHVPALKPKPFSENEKLIAIDQLPKYVQPVFDGFKTLNRIQ
SRLCKCALDSDENLLLCAPTGAGKTNVALLCMMREIGKHINADGTINADDFKIIYVAPMR
SLVQEMVGNFGKRLASYNITVSELTGDHQLSREQIAATQIIVCTPEKWDIITRKGGEKTF
TSLVRLIIIDEIHLLHDERGPVLEALIARTIRMIESTQEDVRLVGLSATLPNYKDVALLL
RVKPDSGLFYFDNSFRPVALEQQYIGVTEKKALKRFQIMNEIVYEKTMEHAGRNQVLVFV
HSRKETGKTARAIRDMCLEKDTLGQFLREGSASMEVLRTEAEQVKNLELKDLLPYGFAIH
HAGMTRVDRTLVEDLFADRHIQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGRWTELG
ALDVLQMLGRAGRPQYDTKGEGILITNHSELQYYLSLLNQQLPIESQMVTKLPDMLNAEI
VLGTVQNVRDAVTWLGYTYLYIRMLRQPNLYGISHDHMKQDPLLEQHRADLIHTAALHLD
RSGLVKYDRKSGNFQVTELGRIASHYYCTHETMSTYNQLLKPMLSEIELFRVFSLSGEFK
NIAVREEEKLELQKLMERVPIPIKESIEEPSAKVNVLLQAYISQLKLEGFALMSDMVFIT
QSASRLMRAIFEIVLHRGWAQLADKSLALCKMIDRRMWQSMSPLRQFRKMPEEIVKKIEK
KNFPWERLYDLGPNEIGELIRVPKLGKTIHKYVHQFPKLELSTHIQPITRSTLKVELTVT
PDFQWDEKLHGHSEAFWILVEDVDSEVILHHEYFLLKAKYATDEHYVKFFVPVFEPLPPQ
YFLRIVSDRWIGSETQLPVSFRHLILPEKNLPPTELLDLQPLPITALRNAKYESLYQEKF
PQFNPIQTQVFNAVYNSDDNVFIGAPTGSGKTTIAEFSILRLFQQNPDGRCVYMVPKDAL
AELIFADWHNKFGQLLAKKVVLLTGETGTDLKLLAKGQIIITTAEKWDILSRRWKQRKNV
QNIHLFIADELHLIGGEDGPVIEVVCSRMRYISSQIEKQIRIVALSASLADYKDVSQWLG
CNANCTFNFHPSVRPVPLELHVQGFNVTHNASRLIAMSKPVYNAILRHSPHKPVIVFVPT
RKQARLMAIDILTYCAAEGQPNRFFHAEEEDIKPFLDRMSDKTLKETLSQGVAYMHEGLS
ASDHRLVEQLFDSGAVQIAVITRDLCWAVNIFAHLVIAMDTQFYNGKVHAYEDYPITDVI
QMVGRANRPLEDDDAKCVLMCQSSKKDFFKKFLNDSLPVESHLDHRLHDHFNAEIVTKTI
ENKQDAVDYLTWTFLYRRLTQNPNYYNLQGVTHRHLSDHLSELVENTLSDLEQSKCISIE
DEMDCMPLNLGMIAAYYYINYTTIELFSLSLNNRTKIRGLLEIISSAAEYEDLPVRHRED
NLLRSLAQRLPNKLTSATGGPPKYNDPHVKTNLLLQAHLCRIQLGAELQGDTEVVLGKAI
RLIQACVDVLSSNGWLSPAVAAMELAQMVTQGMWSKDSYLKQLPHFTPDIIKRCTDKGIE
TVFDIMELEDEDRTKLLQLTDSQMADVARFCNRYPNIELTYEIMDKDRIHSGSSVHVAVQ
LEREDEVNGPVIAPFFPQKREEGWWVVIGEPKSNSLLSIKRLTLQQKARIKLDFVAPSPG
HHTYTLYFMSDAYLGCDQEYKFSIDVGDFESSESESD
NT seq
6414 nt
NT seq
+upstream
nt +downstream
nt
atggctgatgctgcggcaagacaacttcaatatgaatacaaagcgaattcgaacttagtt
ttacaagctgatgttcgtcttattgagaggcgaagtcgtgatgaagccacgggagaagtt
atgtcccttgttggaaaactgttaggcacaaaaatgggtgaccgagctcagaaaacaaaa
cctgttaaagcagaagaacgtaaggcaaaacgacagaaacgtgatgaggcacagtatgat
tttacaagaatgaaaggtgcaacactgctgtctgaaggaattgatgaaatggttggaatt
atttataaaccaaaaactcaagaaacaaggcaaacatatgaggttttattaagttttcta
caagaagctctaggtgatcaaccaagagatattttatgtggtgcagctgatgagatcctt
tctgttttaaaaaatgatcggctaaaggacaaagaaaagaaaaaagaaacagaagctttg
ttaggaagtatcactgaagagagatttgcccttttggttaatctttgcaaaaagattaca
gactttggttcagatgaaacaaaaactatagttgctggtgaagaaaacattgatgaaact
tatggaattaatgttcaatttgaagaatctgaagaagaagatgatgaagacatgtatggt
gaagtgagggaagaattggatgatgatgaaggtgaagaagctcgtgaagacattgctatt
catgcagaaaatttgggaggtgtagaggaatcgaaaaaagaaaaatcgctgcacccactt
gatattgatgcttattggcttcaaaggcaactttctaaaatctacgatgatgctatggta
tctcaagctaaagctgcggaagttctaaatgtattgagggatgcaagtgatgacagagaa
tgtgaaaatcaattagtattgcttttgggttatgattgttttgatttcatcaaggtttta
aagaaaaataggcaaatgatttattattgtacggtattggccaaatcgcaaagcgaatct
gaaagacaaaaattgaaggatcgtatgtcagatgatccagcactggcgcgtattttaaga
cttttggacaccggaaaaggcgacgatgaggatgatgacgaatcgtcaatgcgatcgtcc
agaaaaaaagatcataatgacgaaaatgaggctggaagtggcgctactttgccaggatct
cgacaaataattgatttcgaagatctcgttttttctcaaggatctcacttcatggcaaac
aaaagatgtcagttgcctgatggctcctttagaaagcagcgaaaaggctacgaagaggtc
cacgttccagcattaaaaccgaaaccgttttcagaaaacgaaaaattaatagcaatcgat
caattaccgaaatacgtacaaccggtttttgatggtttcaaaacgttaaatagaatacaa
agtcgactatgtaaatgcgcattagactcggacgaaaatttgcttctttgcgccccaaca
ggtgccggtaaaacaaacgttgcccttctctgtatgatgcgcgaaattggtaaacatatt
aacgccgatggtacgataaatgccgacgatttcaagataatttacgtcgctcctatgaga
tcacttgttcaagaaatggtcggcaattttggcaaaagactggcaagctacaacataact
gtgtcagaattaacaggagatcatcagttgtcgcgcgaacaaatcgcagctacccaaatt
attgtctgtactccagaaaaatgggacataataacgagaaaggggggcgaaaaaacgttc
acaagtctcgtacgcctcattattatcgacgaaattcatctactacacgacgaacgtggc
cctgtcttagaggcattgatcgccagaacaatcagaatgattgaatccacccaggaagat
gttcgtttggtgggattatcggctactttacccaattataaggacgttgcgttgttgtta
agagtgaagcctgattcggggctgttttatttcgacaacagtttcagaccagttgctttg
gaacaacagtacattggtgtgacagagaaaaaagcgttgaaacgttttcagataatgaac
gagattgtgtacgaaaaaactatggaacacgctggtagaaaccaggtccttgtttttgtt
cattctcgcaaagaaactgggaagaccgcccgtgcaattcgagacatgtgcttagaaaaa
gacacgttaggacaatttttaagagaaggatccgcctctatggaggttcttcgtactgaa
gcagaacaagtaaagaatctggaacttaaagatcttttaccgtatggttttgcaattcat
cacgctggcatgacccgtgttgataggacactagtcgaggatttgttcgctgatcgccat
attcaagtattagtttctacggcaacactggcttggggggttaacttacctgcacatact
gtaattataaagggaacacaaatctataatccggagaaaggtcgatggactgaacttggc
gctttagatgtcctacaaatgttgggcagagctggtagacctcaatacgacaccaaaggg
gagggaatacttataacaaaccacagtgagcttcagtactacctttcattgttgaatcaa
cagttacctattgaatcccaaatggtaaccaaacttccggacatgctgaatgcggaaata
gtattggggactgttcaaaacgtaagggatgccgtcacttggcttggatacacgtaccta
tacattagaatgttacgtcaacctaatctttatggaatttcgcacgatcatatgaaacaa
gatcctctccttgagcagcacagagctgatttaattcatacagccgcattacacttagac
agaagtggattggttaagtatgatcgtaaaagtggaaatttccaagtaaccgagttggga
cgtatcgcttcccattactactgcactcacgaaacaatgtctacatacaatcaacttttg
aaaccgatgcttagcgaaatcgaactttttcgagtgttttctttgtcaggtgaattcaag
aacatcgcagttcgtgaagaggagaaactggaacttcaaaagttgatggaacgcgttcca
attcctattaaagagagtatagaagaacccagtgcgaaagtgaatgttctgttacaggcc
tacatttcccaattgaaactggaaggttttgctctcatgtctgatatggtttttatcact
caatccgcgtcacgattgatgagagctatttttgaaatcgtgttacataggggatgggct
cagcttgctgataaatcgttggccctttgcaaaatgatagatcgcagaatgtggcagtcg
atgtctccattgaggcaatttcggaaaatgcccgaggagatcgttaagaaaatcgaaaag
aaaaatttcccgtgggaaagactttacgatctcggtcctaacgagattggggaactaata
cgtgttcccaaattaggaaaaactattcataagtatgtacatcagtttccaaaactggaa
ttatcgacccacatccaacctatcaccagatcgacattgaaagtagagttaacggttaca
cctgactttcagtgggacgaaaaacttcacggccattcggaagctttttggatcctagtt
gaagatgtggactctgaagtgattttgcatcacgagtatttcttattaaaagccaagtat
gctaccgatgagcattatgtaaagttctttgtgccggttttcgaacctttacctcctcag
tattttctacgaatagtatctgataggtggataggatccgaaacacagcttcctgtatca
tttcgtcatttaattttgccagaaaagaacttgccacctacggaactgctggatttgcaa
cccttacctataaccgccttgagaaacgcaaagtatgaatccctatatcaggagaaattt
cctcagtttaatcccattcaaactcaagttttcaatgcagtatacaacagcgacgataac
gtgtttataggtgcccccactggttcggggaaaacgactatagctgaattctctattctt
cgtctcttccaacaaaatccagatggacgttgtgtatacatggtcccgaaagacgctttg
gctgaacttattttcgctgattggcacaacaaatttggccagttgttggcaaagaaagtc
gttttattaacaggggaaactggtactgatttgaaattgctcgccaaaggtcaaatcata
ataacaacagccgaaaaatgggatattctttcacgacgctggaaacagcgtaaaaacgtt
cagaatattcatttattcatagcagatgaactacatttgatagggggtgaagatggtcct
gtaattgaagttgtttgttctcgaatgcgttacatttcatctcagattgaaaaacaaata
agaatagtagcattgtcagcttctttagcagactacaaggatgtatcacaatggttggga
tgcaatgcaaattgcacgtttaattttcatcccagcgtgagaccagtacctttggaatta
cacgttcaaggtttcaacgtaacccacaatgcatctcgtttgattgccatgtcgaaacca
gtgtataacgccatattaagacatagccctcataaaccagtcattgtgtttgtaccaaca
agaaaacaggcacgactgatggccattgacatattgacgtattgcgcagccgaaggacaa
cccaatagatttttccatgctgaagaagaggacattaagcctttcttggacagaatgagc
gataagactctcaaagagaccctatctcaaggtgtagcctacatgcacgaaggtctttct
gccagtgatcaccgtttggtagaacagctctttgattcgggtgctgtacagatagctgtg
attactcgagatctctgttgggctgttaatattttcgctcatctcgttatcgcaatggat
acgcagttttataatggcaaagttcacgcctatgaagattatccaatcactgacgtaata
caaatggtcggaagagcgaacaggcctttagaagacgatgatgccaagtgtgttttgatg
tgtcagagttctaagaaagatttctttaagaagtttcttaacgattcattgccagttgag
agccacttggaccatcgacttcatgaccattttaacgcggaaattgtaacgaaaactata
gaaaataaacaggacgccgtagactatttgacctggacgtttttgtacagacgacttacg
cagaatccaaactactataatttacagggagtcacgcacagacatttatcagatcatctg
tctgaacttgtcgagaacacgttgtcagacttggaacaatccaagtgtataagtattgag
gatgaaatggactgtatgccacttaatttaggaatgattgcagcatactactacattaat
tatactacaatagaattgttcagcttatcactaaacaaccgtacaaagattcgtggtttg
ctcgaaattatctcgtccgctgctgaatacgaagatttgccagttcgtcatcgtgaagac
aatttgctccgcagtttggctcaaaggttaccgaacaagcttacaagtgcgaccggggga
ccacctaaatacaacgatcctcacgtgaagacaaaccttctccttcaagctcatctgtgt
cgcattcagttaggggcagaattgcaaggagacaccgaggtggtgcttggcaaggcaatt
cgtctgattcaggcatgcgtggatgtgttgagctcaaacggatggctatcgcctgctgtg
gctgccatggaactggctcagatggtcacacaagggatgtggagcaaagattcatacctt
aaacaactacctcactttactccagatattattaaaaggtgtactgataagggcatagaa
actgtctttgacataatggaattggaggatgaagatcgtacaaagctattacaactgacg
gactctcaaatggctgatgttgcccgattctgtaatcgatatccaaacatcgagcttact
tacgaaataatggacaaagatcgtatacattcaggatcatcggttcacgtagctgtccaa
ttggaaagagaagacgaggtcaatggaccggtcattgctccgttctttccccagaaacga
gaggaaggttggtgggtggttataggagaaccaaaatcgaattctttgctgtctattaaa
agattaacattacaacaaaaggctaggattaagctagattttgtagctcctagtcctggt
catcacacttatactttgtactttatgagtgacgcctatttgggatgcgatcaagagtat
aagttttcaatagacgttggtgattttgaatcgagtgaaagtgaatcagactaa
DBGET
integrated database retrieval system
