Agrilus planipennis (emerald ash borer): 108739275
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Entry
108739275 CDS
T07419
Name
(RefSeq) endoribonuclease Dcr-1 isoform X1
KO
K11592
endoribonuclease Dicer [EC:3.1.26.-]
Organism
apln
Agrilus planipennis (emerald ash borer)
Brite
KEGG Orthology (KO) [BR:
apln00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
apln03036
]
108739275
Chromosome and associated proteins [BR:
apln03036
]
Eukaryotic type
Gene silencing
RISC (RNA-induced silencing complex)
108739275
microRNA pathway
RISC loading complex
108739275
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Ribonuclease_3
Dicer_platform
Dicer_dsRBD
Ribonucleas_3_3
Dicer_dimer
PAZ
Helicase_C
Dicer_PBD
Motif
Other DBs
NCBI-GeneID:
108739275
NCBI-ProteinID:
XP_018328602
UniProt:
A0A0B5G268
LinkDB
All DBs
Position
Unknown
AA seq
1860 aa
AA seq
DB search
MACHLSENVSTQIFTPREYQVELLDSAKNKNIIICSSSSIAKTFIAVKLVQELAYDIRFK
RGKQAVFVLDLQNVVVIESHMKLLTDLTVVSIKECINSYTEWKDHSEAAVIVTTAEVCAK
LLSDNYLTFEKLNLLVVDDYLYGERQVHVKHIMKYYHLSRVCNTRIIGLAAGLLGAELKP
DCLESELRRLENLLCSSVDTSSELVTLLRLCSKPRENLIECEVEKCSTLQEVLKEKILET
KEFLIDHRFDPSEIYSDEFLEELLALPDPKIDPLNILDIFLHILEDLGPWAADQAALSLL
TYIEKLKVKVPYERHFILLCMISTVMVRIRAICDWEFQDLSEMEKILRYSTKKVLNLLDI
IRQFKPNSEQIIETKDEAKLEDNILKINGDNENCDNPAENLKNFSINQKSSISNNNFNMQ
TKNKRAYRIYRRSNYTRVQQDDNLCAIIFVHNRFTAKVLYSLLYNVSQNDEEMWWVSALY
TVEKTADPLKEPREAELEHRRQEEVLRKFRMHSCNIMVATSVLEQGCDLPKCNLVICFDL
PLSFHSYVKTKARARAADAYYLLLSNETELNKFVEHLSEYKEVENILLKHCQVLEPDEQE
CIEADYYCASGPLYQPLNIPGAPSVTLMNAIALINRYCAKLPSDTFTRLTPLWSILKTQH
QFSCCLRLPINSPLKNKITGPLMPNELLSRRAVAFITCQMLHKIGELDDYLQPISKENFR
TSEDDWNKFALEEADEELNRENIEPRPGTTKRRQYYYKKVANSLMHCKPNPGEATFLYKI
VMTLTCPLPEEQNTRGRKIYPPENFVQGFGILTSKEIPTICPFPIFTRSGEVSVELKLCS
SDIVMTDEQIHKISEFLNYTFSNVLKLQRYLMLFNPDASESSFLIAPTRDTSNGSAIVDW
DFLNIIYENRYILPQTVPETTRKEYRFDPNNYKDAVVMPWYRNQDQPQYFYVAEICCNLN
PKSNFPGSEYATFEEYYLRKYGIQIQNSEQYLLDVDHTSARLNFLTPRYVNRKGVALPTS
SEETKRAKRENLEQKQILVPELCAIHPFPASLWRKAVCLPCILYRINALLLADQVRRTVA
VELGLGKIELPKDFKWPSLNFGWSLSDVLKKTKEIELAKDSITQVKEIDVVEISAIVEKD
SNDSQEPSEKSLVKEDDKEKEEVDESDSENKDKDWMEIGTWSNDMADSSVYTTDSIVRYA
SPTSWLDTPYDYSDSDDSYSIEEEESDYEGLKIEFMGDNTAEAVDEGNAIENYTQTLAII
DTWDPNNADEQSEELKQEFYENCRKNADHILSSNVLVPKNKRFCRETYDSSNKLNETLNT
HCDNGINFECIELPQKSLVVNATSSQNNSKKTMCNINTELNFSFDKQPDLKEHPGPSPSV
LLQALTMSNANDGINLERLETIGDSFLKYAITNYLYSKYENVHEGKLSHLRSKQVSNLNL
YRLGKSKALGESMIATKFDPHDNWLPPCYYVPKELEEALMDARVPANYWTPADVAATRDM
SLDEICQMVREHGEALNLPCIIPYNLVTQHSIPDKSIADCVEALIGAYLIECGPRGALLF
MAWLGIRVLPQNKNGCYGELQLPSSPLINNVENPLQELEYLLDGYDEFENKIGYHFKDRA
YLLQALTHASYSPNTVTDCYQRLEFLGDAVLDYLITRHLYEDSRMHSPGALTDLRSALVN
NTIFASLAVRHGFHRFFRHLSPGLHEVIERFVRIQEESGHALVEELYLLAEHECEEVEDV
EVPKALGDVFESVAGAIFLDSDMSLDAVWNVYYNMMRSEIERFSDKVPKSPIRELLELEP
ETAKFSKPEKLADGRRVRVTVEVFGKGVFKGIGRNYRIAKCTAAKCALKHLKKRGLLRKN
NT seq
5583 nt
NT seq
+upstream
nt +downstream
nt
atggcatgtcacttaagtgaaaatgtctcaacacagatttttacacctagggaatatcaa
gtggagttgctggactcggcgaaaaataaaaatatcattatttgttccagtagtagtatt
gcaaaaacattcatagcagtcaaacttgttcaagaattagcctatgatatacgctttaaa
aggggcaagcaagcagtatttgtcttagatttacaaaacgttgttgttatagaatcacac
atgaaattactcacagatttaactgtggttagtataaaagaatgcattaatagttacaca
gaatggaaggatcatagtgaagctgcagtaatagtgacaactgctgaagtatgtgcaaaa
ttgttatctgacaactatttaacatttgaaaaattaaatttgttagttgtggatgactat
ttgtatggagaaaggcaagtccatgtaaagcacattatgaaatattatcatttaagtaga
gtatgtaatacaaggataattggtctagcagcaggacttctgggagcagaactgaaacct
gattgtttagagtcagagctacgacgtttagaaaatttgttgtgttcatctgtagataca
tccagtgaattagttacattgttaagattatgctcaaaacctagggaaaatttaatagaa
tgtgaagttgaaaaatgttcgactcttcaagaagtactaaaggaaaagattttagaaact
aaggaatttttaatagatcatcgttttgatccaagtgaaatatattcagatgaattcctt
gaagaacttttagcgctacctgatcccaagatagaccctttaaatattttagacatattc
ctacatatattagaagatcttggtccctgggctgcagatcaagccgctcttagtttgctt
acatacatagaaaaattaaaagtaaaagttccttatgaacgtcatttcattttgctttgc
atgatctctacagttatggtaagaatacgggcaatatgtgactgggagtttcaagactta
tcagaaatggaaaaaatattgcgctactcaacaaaaaaggttcttaacttactagatata
attagacaatttaaaccaaattctgaacaaataattgaaacaaaagatgaagcaaaactt
gaagataatatcttaaaaattaatggagataatgaaaactgcgacaatcctgctgaaaat
ttaaaaaatttttcaatcaatcagaaaagtagtatatcaaacaataactttaatatgcaa
acaaaaaacaaaagggcatatagaatttaccggcgtagtaattatactagagttcaacaa
gatgataatttatgtgctattatttttgttcataatcgatttactgctaaagttctgtat
tcactgctgtataatgttagtcaaaatgatgaagaaatgtggtgggtatctgctctctac
actgtggagaagacagctgatccattaaaagagccccgcgaagctgaactagagcatcga
cgccaagaagaagttttacgaaaatttagaatgcacagctgtaatattatggtagctact
tctgttctcgagcaaggctgtgatttgcccaaatgtaatctcgtcatttgttttgatttg
ccactatcttttcatagctacgttaaaacaaaagcgcgagctcgagctgcagatgcatac
tatttgttattatccaacgaaacggaattgaataaatttgtcgagcatttatcagaatat
aaggaagttgaaaatattttgttaaagcattgccaggttttagagcctgatgagcaggaa
tgcatcgaagcagattactactgtgcttctggtcctctctaccaaccgcttaatataccc
ggtgctccttctgtaaccctaatgaatgcaatagcacttataaatagatattgcgcaaaa
ttaccaagcgatacatttactcgtttaacaccgttgtggtcgattcttaaaacgcaacat
caattttcctgttgtcttcgtctacctatcaactctccattaaaaaataaaataactggt
cctctaatgcctaatgagctcctctctagaagagctgttgcgtttattacatgtcagatg
cttcataaaatcggtgaattagacgactatcttcagcctataagcaaagaaaattttcga
acaagtgaagacgactggaataaatttgctcttgaggaagcagatgaagagctaaacagg
gaaaatatcgaaccacgaccaggaactacgaaacgcagacagtactattacaaaaaagtc
gcgaattctctaatgcattgtaaaccgaatcctggtgaagcaactttcctttataaaatt
gtcatgacattaacgtgtcctttaccagaggaacagaatacacgaggaagaaaaatatat
ccaccagaaaattttgtacaaggatttggtatcttaacttcaaaagaaattccaactatt
tgtccatttccaatttttacgaggtccggagaagttagtgtagaattgaagttatgttct
tcagatatagtaatgactgatgaacaaattcataaaataagcgaatttttaaattacaca
ttctctaacgttttgaaattacaaaggtacttaatgctgtttaatccagatgcttcagaa
agttcgttcttgattgcaccaacaagagatacttctaatggtagtgctattgttgactgg
gattttttaaatattatttatgaaaataggtacatattaccacaaacagtaccagaaacg
actagaaaagagtacagatttgatcccaataattataaagatgcagttgtgatgccatgg
taccgtaatcaagatcagccgcagtacttttatgttgctgaaatttgctgcaatctcaat
cctaaatcaaattttccgggctctgaatatgccacatttgaagaatattatctacgaaag
tatggaatacaaatccagaacagtgaacagtacttattagatgttgatcacacttcagcc
cgtcttaattttttgaccccccgttatgtaaatcgtaagggtgttgctttacccacgagt
agcgaagaaacaaagcgtgcaaaacgggaaaacttggaacaaaaacagattctagtacct
gaattatgtgctatacatccatttcctgcatctctttggaggaaagcagtttgtctccct
tgtattctttacagaataaatgcattacttttagccgatcaagtgagacggactgtagcg
gttgaacttggattaggcaaaattgaactcccaaaagattttaaatggccttctttaaat
tttggatggagtttgagtgatgttttgaagaaaaccaaagagatagaattggcgaaagac
agtataactcaagttaaagaaattgatgtggttgaaatttctgcaatcgttgaaaaagac
tctaacgattctcaagaaccgagtgaaaaatccttagttaaagaagatgacaaggagaaa
gaagaagttgatgaatcagattctgaaaataaagataaggattggatggaaataggaacg
tggtctaatgatatggcagattcatctgtttacacaaccgacagtattgtccgttatgca
tctcctacaagttggttagatactccatatgattattctgattctgatgattcatacagc
atagaagaagaagaatctgactacgaagggcttaaaattgaatttatgggtgataatact
gccgaagcggtggacgaaggtaatgcaatcgaaaactatacccaaacattggctataatc
gatacttgggatcctaataatgccgatgagcaatcggaagaattaaaacaggagttttac
gaaaactgtcgaaaaaatgccgatcatatcttgtcaagtaatgtactagtgccaaaaaat
aaacggttttgtagagaaacttacgatagctcaaataaattaaatgaaacacttaataca
cattgtgataatggaattaattttgaatgtattgaactgccccaaaagtcgctagttgta
aacgcaacttctagtcaaaataatagcaaaaagacaatgtgcaatattaatacggaatta
aattttagttttgataagcaaccagatctaaaagaacatcctggtccgagcccgagcgtg
ttacttcaagccttaacaatgtcaaatgccaacgatggtattaatttagaacgtttagaa
acgataggcgattcgtttttaaaatacgccataactaattacctttattctaagtatgaa
aatgttcacgaaggaaaattaagtcatttacgttcgaaacaagtgagcaatttaaatttg
tatcgattaggaaagtcaaaagccttgggtgaatcgatgatagccacaaaatttgatcca
catgacaactggctccctccttgttactatgtgccaaaggaactagaggaagctctgatg
gatgcaagggtaccagctaattactggactccggctgatgttgctgccactagagatatg
tctttagatgagatatgccaaatggtacgtgaacacggcgaggctttaaatttgccttgt
attattccatataacttagttacccaacacagtattcccgacaaaagtatagcagactgt
gtcgaagcgttgataggcgcttatttgattgagtgtggacctagaggagccctccttttc
atggcgtggttgggtattagagttcttccacaaaacaaaaacggatgttacggtgaattg
caattaccttcttctcctttaattaacaacgtggaaaatcctctacaagaattggaatac
ttattagatggttatgacgaatttgagaataaaattggctatcattttaaagaccgtgcc
tatctcttacaagccttaactcatgcttcttattcacctaacacagtaacagattgttac
caaagactcgaattcttgggagatgccgtgttagattatcttataactcgccatctgtat
gaagactccagaatgcattctccaggtgcattgaccgatttaagatctgcattggtaaat
aatacaatatttgcttcattagcagttcgacatggattccacagattttttagacactta
tcgccaggtttacatgaggtgatcgaacgatttgtaaggattcaagaagaaagtggtcat
gctttagtggaagaattgtatctccttgcggagcacgagtgcgaagaagtagaagacgta
gaagttccaaaagctcttggtgacgttttcgaatcagttgcaggggcaatatttttggat
tctgacatgtctttggacgcggtttggaatgtttattacaatatgatgcgtagcgaaatc
gagaggtttagtgacaaagtgcctaagtctcctataagagaacttctcgaattggaacca
gaaactgccaagttcagtaaacctgagaaattagcagacggtagaagagtacgtgtgact
gttgaagtgtttgggaaaggtgtttttaaaggaattggtcggaattatcgaattgctaaa
tgtactgcagctaaatgtgctttgaaacacttaaagaaacgtggcttgttaaggaagaat
tag
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integrated database retrieval system
