Agrilus planipennis (emerald ash borer): 108740296
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Entry
108740296 CDS
T07419
Name
(RefSeq) protein PAT1 homolog 1
KO
K12617
DNA topoisomerase 2-associated protein PAT1
Organism
apln
Agrilus planipennis (emerald ash borer)
Pathway
apln03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
apln00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
108740296
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
apln03019
]
108740296
Messenger RNA biogenesis [BR:
apln03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
108740296
mRNA degradation factors
5'-3' decay
Decapping complex
108740296
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
PAT1
Motif
Other DBs
NCBI-GeneID:
108740296
NCBI-ProteinID:
XP_018330081
UniProt:
A0A1W4X1S1
LinkDB
All DBs
Position
Unknown
AA seq
760 aa
AA seq
DB search
MADTYCGLGAQINNDDAVALPDDDLDCIESDEDYDALNDETFGALEDSSTLDDWEQQHEN
FAKLAESRKHSDQIEDSLNKLVLDGTEDINSLNKKSIWSFEGSRNGENVLTIFSSLNKNY
IDSKKDTESDLLNCSLNNIRPPPGIISQVPKKVISVEELERGLIKNNAKLSQSSTSVHPP
LPFPPQHSQLPRPSHLPHSPHQNGPIFQHPMLQHNMPPRPPPGLPHHPHMPLMPPRHPNV
PPNPLMHMVPPIPPHFMQGNQIAPPGMMYPGGSQFPVNHPYNFPPPPRNVNSLGYGHPNR
NQNNYQNYYQNNRQGRMDPNHNVRQRNSKSMINNINNNGHYGNIVQDEYAGLMSGREKQW
LLNIQMLQLNTGTPYFDDYYYTIFKERKARQNKENQPLEQIQRHRRNSERQDSQNHLTPK
VYTPLQFENSLGKLQCGSVTAPRKIIDMDVVSMDKESEVGSTVSSRDSRKTKQLLLELEA
LYSLLLKVEDLRNPMYHANIEKLVELKQKQRLRELETASTTEQKQEILKQLQQDSVITTE
NQQEVLTKVANGFCLDEKFSSFLAIRKGKMLLLRLLPYLSADLFTTHLSDLWLKVLLSIP
TVGRRDTAGDNLLPKLYPYFKKYIQTCNMSNILDIVTNLVESFKLDNSRSTPLSYQGKTP
LNFIVANKFGVSALSTMLVRMEYLLSTNDATERQLSDWQNFVEAWCDAVPSFSSSSSSTV
ATPLESIPTPVFNKHCNRIGELLTTSVKCQLFRKHFVDTE
NT seq
2283 nt
NT seq
+upstream
nt +downstream
nt
atggctgatacttattgcggattaggagcacaaataaataatgacgacgccgtagcttta
cctgacgatgacttagactgtattgaaagtgatgaagactatgatgcgttaaatgatgag
acttttggagctctagaagattcgtctactttggatgattgggaacaacaacatgagaac
tttgctaaacttgcagaaagtcgaaagcattcggatcaaattgaggactctttaaacaaa
ttagttctcgatggcacagaagatattaactcattaaacaagaaatcaatttggtcattt
gaaggttcaagaaatggagaaaatgtattgactattttctctagcttaaataaaaactat
attgactcaaagaaagatactgaatctgatcttcttaattgttctctaaataatattcgg
ccaccccctgggataatatctcaggttcctaaaaaagttattagtgttgaagaacttgaa
cgtggactaataaaaaataatgcgaaactatcacaatcatctacatcagtacatccccca
ttgccttttcctccacaacactcgcagcttccccgcccttctcatctcccgcattcaccc
catcaaaatggacctatttttcaacatcctatgcttcagcacaatatgcctcctagacct
ccacctggtttaccacatcatccacacatgccgttgatgccaccacgacacccaaatgtg
ccacccaaccctcttatgcatatggtgcctcccattcctccacattttatgcaaggaaat
caaattgctccacctggaatgatgtatcctggaggctctcaatttcctgttaatcatcct
tataatttcccgccgcctccaagaaacgtaaattcccttggttatggtcatcctaacaga
aaccaaaacaattaccaaaattactaccaaaacaatagacaggggcggatggaccctaac
cataatgtcagacaaagaaattctaaatcaatgattaataatattaataacaatggtcat
tatggtaatatagtccaagatgaatatgcaggactgatgagcggtagagagaagcaatgg
cttttgaatatccaaatgttacaattgaatacgggaacaccctactttgatgattattac
tatacgatattcaaggagagaaaggcgcgacaaaataaagaaaatcaaccgcttgagcaa
attcaaagacacagaagaaatagtgaacgacaagacagtcaaaaccatctaacacctaaa
gtatatacgcctttgcaatttgaaaattctttgggaaagctgcagtgtggctcggtcacg
gctccacgtaaaataatcgatatggacgttgtatccatggataaagaatcggaagtagga
tcaacagtttcgtcgcgagacagtcgtaaaacaaagcagctcttactggaacttgaggca
ctgtattctctcttgttgaaagtggaagacttgagaaatcctatgtatcatgcaaatatc
gagaaactggtcgagttgaaacagaaacaaagacttcgagaactggaaactgcttccact
acagaacaaaagcaagaaatcctcaaacaacttcaacaggacagcgtgataacgaccgag
aatcagcaagaagtgctgactaaagtggcgaatggattttgtttggacgaaaaattttcc
agttttttagctattcgaaaaggaaaaatgttgttgttaaggctattgccatacttatca
gctgatttatttactactcatctatcagacctgtggttaaaggtgcttctgagcataccg
acagtcggtcgtagagatacggcgggtgacaacctgcttccaaagctttatccgtatttt
aagaagtatattcaaacttgtaatatgagcaatattttggatatcgttacgaacttagta
gaatcttttaaactggacaacagcagaagtactccccttagttatcaaggaaaaactccc
ctcaattttatagtggctaataagttcggtgtttcggctctttcgactatgctcgttcgc
atggagtacctgttgtcaactaatgatgcgactgaacgacaattgtctgactggcaaaat
ttcgtggaggcgtggtgtgatgcggtcccttcgttctcttcctcatcctcaagtaccgtg
gctacacctctcgaatccatacctacgcccgtatttaacaagcactgtaatcgcattggc
gaactgctgactacatccgttaaatgtcagctgttccgcaaacatttcgtagacaccgaa
taa
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