Aurantivibrio plasticivorans: NBRC116180_01690
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Entry
NBRC116180_01690 CDS
T11902
Symbol
rho
Name
(GenBank) transcription termination factor Rho
KO
K03628
transcription termination factor Rho
Organism
aplv Aurantivibrio plasticivorans
Pathway
aplv03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
aplv00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
NBRC116180_01690 (rho)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
aplv03021
]
NBRC116180_01690 (rho)
03019 Messenger RNA biogenesis [BR:
aplv03019
]
NBRC116180_01690 (rho)
Transcription machinery [BR:
aplv03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
NBRC116180_01690 (rho)
Messenger RNA biogenesis [BR:
aplv03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
NBRC116180_01690 (rho)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Rho_RNA_bind
ATP-synt_ab
Rho_N
OB_RNB
NACHT
AAA_22
AAA_25
S1CSD-TOTE-2
ResIII
Mor
DUF3086
Motif
Other DBs
NCBI-ProteinID:
BFR58731
LinkDB
All DBs
Position
complement(186436..187695)
Genome browser
AA seq
419 aa
AA seq
DB search
MNLTDLKTKPIEELIDIAKQMGLENLARSRKQDVIFNILKRHAKSGEDIYGDGVLEILQD
GFGFLRSADSSYLAGPDDIYVSPSQIRRFNLRTGDFIAGKIRPPKEGERYFALLKVAEIN
YDKPENSRNKILFENLTPLFPDQRLVLEAGNGSTEDLTGRIIDLVSPIGKGQRGLIVAPP
KAGKTIMMQHIAQSIIRNNPECHMIVLLIDERPEEVTEMQRSVRGEVVASTFDEPPTRHV
QVAEMVIEKAKRLVEHKKDVVILLDSITRLARAYNTIVPSSGKVLTGGVDAHALERPKRF
FGAARNIEEGGSLSIIATALIDTGSKMDEVIYEEFKGTGNLELHLDRKIAEKRIYPAINI
RRSGTRREDLLMKEDELQRVWILRKLLNDMEDVAATEFLAGKLKDFKTNDEFFLSMKRK
NT seq
1260 nt
NT seq
+upstream
nt +downstream
nt
atgaatctaacagacctaaaaaccaaacccattgaagagctcattgatatcgccaaacaa
atgggtctagaaaacctcgctcgatcacgaaagcaagacgtcatcttcaacatccttaaa
cgacacgcgaaaagcggtgaagatatttacggtgatggcgtgctagaaattcttcaagat
ggctttgggtttctaaggtctgctgacagctcatacctcgccggcccggatgacatttac
gtatcccccagccaaatacggcgcttcaacctccgcaccggagactttatcgctggaaaa
attcgtcccccgaaggaaggtgagcgttactttgcattattgaaagtggcggaaatcaac
tacgacaagccagaaaactcccgcaataaaattctatttgaaaaccttacccccctgttt
ccagaccaacgcttggtgcttgaagcaggcaacggctctacagaagatcttaccggtcgc
atcattgacttagtatcgccgattggtaaagggcagcgcgggctcattgttgcgccaccc
aaagccggtaaaaccatcatgatgcagcacatcgcacagtccatcatacgtaacaatcca
gaatgtcacatgattgtgcttttgattgatgagcgccctgaagaagtgacagaaatgcaa
cgttccgtgcgcggagaggttgttgcttcaacattcgatgaaccaccaactcgccacgtg
caagtggcagaaatggtcatcgagaaagcgaagcgcttggtagagcataaaaaagatgtg
gtaattcttctcgattccatcacccgtttagctcgtgcatacaacaccattgttccttca
tccggtaaagtattgaccggtggtgtcgacgctcatgcactggagcgcccgaaacgcttc
ttcggtgccgctcgtaacattgaagaaggtggcagcctatcgattatcgctaccgcattg
atcgacaccggttcaaaaatggacgaagtgatttacgaggaatttaaaggaacgggcaac
ttagaattacatctcgatagaaaaattgctgagaagcgtatttatccagccattaatatc
cgtcgctccggcactcgccgtgaagacctactcatgaaagaagatgagctacaacgcgtt
tggattcttcgcaaattactgaacgacatggaagacgttgccgctacagagtttttggct
ggtaaattaaaagacttcaaaaccaacgatgaatttttcctttccatgaaacgaaagtaa
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