Asaia platycodi: JCM25414A_07830
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Entry
JCM25414A_07830 CDS
T12000
Symbol
rho
Name
(GenBank) transcription termination factor Rho
KO
K03628
transcription termination factor Rho
Organism
aply Asaia platycodi
Pathway
aply03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
aply00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
JCM25414A_07830 (rho)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
aply03021
]
JCM25414A_07830 (rho)
03019 Messenger RNA biogenesis [BR:
aply03019
]
JCM25414A_07830 (rho)
Transcription machinery [BR:
aply03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
JCM25414A_07830 (rho)
Messenger RNA biogenesis [BR:
aply03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
JCM25414A_07830 (rho)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Rho_RNA_bind
ATP-synt_ab
Rho_N
AAA_25
OB_RNB
AAA_22
S1CSD-TOTE-2
AAA
NACHT
Fungal_virus_P2_C
Motif
Other DBs
NCBI-ProteinID:
BHC26232
LinkDB
All DBs
Position
complement(898560..899855)
Genome browser
AA seq
431 aa
AA seq
DB search
MHLAELKKKSPADLLAYAEELQIENASSMRKQDIMFAILKALADNDQAIYGEGTLEILSD
GFGFLRSPEANYLPGPDDIYISPAQVRRFGLRPGDTVEGQIRAPRDGERYFSLLKVNSIN
FEEPDSVRQRINFDNLTPLYPERRLRMEVEQVGAPEPQPTGKGRKDQRDYTPRVIDLVAP
IGMGQRALIVAPPRTGKTVMLQSIASSISANHPDVFLIVLLIDERPEEVTDMARSVRGEV
VSSTFDEPATRHVQVTEMVLEKAKRLVEHKRDVVILLDSITRLARAYNTVVPSSGKVLTG
GVDANALQRPKRFFGAARNIEEGGSLTIIATALIDTGSRMDEVIFEEFKGTGNSELILDR
KLADKRTFPAIDITKSGTRKEELLVDRAMLSKMWVLRRILSPMGTMDAMDFLLDKLKYSK
TNQDFFDAMNN
NT seq
1296 nt
NT seq
+upstream
nt +downstream
nt
atgcatcttgctgaactcaagaaaaaatcacctgccgatttgctggcctatgctgaagag
ctgcaaatcgagaacgcgtcctcgatgcgcaagcaggacatcatgttcgccattctcaag
gccctggcggataatgatcaggccatctatggcgaaggcacgctggaaatcctgtctgac
ggtttcggctttctccgctccccggaggccaattatctgcccggtccggacgatatctat
atctctcccgcccaggtgcgccgcttcggcctgcgccctggtgacacggtcgagggtcag
attcgtgcgccgcgcgatggtgagcgctatttctcgctgctcaaggtcaattcgatcaat
ttcgaagagcccgactccgtccgtcagcgtatcaatttcgacaatctgacgccgctttat
cctgagcgtcgcctgcgtatggaagtggagcaggtcggtgctcccgagccgcagccgact
ggcaagggcaggaaagaccagcgcgactacaccccgcgcgtgatcgatctcgtggcccct
atcggcatgggccagcgcgccctgatcgtggcgccgccgcgcaccggcaagaccgtaatg
ctgcagagcatcgcgtcttccatcagtgccaaccatcccgacgtgttcctgatcgttctt
ctgatcgatgagcgccccgaagaagtgaccgatatggcccgctccgtgcgcggcgaagtc
gtctcttccacctttgacgagcccgcgacccgccatgttcaggtgactgaaatggtgctg
gagaaggccaagcgtctggtcgagcacaagcgtgacgtcgtcattctgctcgactcgatc
acccgtctggcccgtgcctacaacactgttgtgccctcatcgggcaaggtgctgaccggt
ggtgtcgacgccaacgctctgcagcgccccaagcgcttcttcggcgctgcgcgcaacatc
gaagagggtggctcgctcaccattatcgcgaccgcgctgatcgataccggcagccgcatg
gatgaggtgatcttcgaagagttcaagggtacgggtaactccgaactcatcctcgaccgc
aagctcgccgacaagcgcaccttcccggccatcgacatcaccaagtcgggtacgcgtaag
gaagaactccttgttgatcgcgccatgctgtcgaagatgtgggtgctgcgtcgtatcctc
tcgccgatgggcacgatggatgcgatggacttcctgctcgacaagctgaaatacagcaag
acgaaccaggactttttcgacgccatgaacaactga
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