Asaia platycodi: JCM25414A_15740
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Entry
JCM25414A_15740 CDS
T12000
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase subunit beta
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
aply Asaia platycodi
Pathway
aply03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
aply00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
JCM25414A_15740 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
aply03021
]
JCM25414A_15740 (rpoB)
03400 DNA repair and recombination proteins [BR:
aply03400
]
JCM25414A_15740 (rpoB)
Enzymes [BR:
aply01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
JCM25414A_15740 (rpoB)
Transcription machinery [BR:
aply03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
JCM25414A_15740 (rpoB)
DNA repair and recombination proteins [BR:
aply03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
JCM25414A_15740 (rpoB)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_3
RNA_pol_Rpb2_7
RNA_pol_Rpb2_2
RNA_pol_Rpb2_1
RNA_pol_Rpb2_45
Bac_rhamnosid_C
DOCK-C2
Motif
Other DBs
NCBI-ProteinID:
BHC27023
LinkDB
All DBs
Position
1786807..1790982
Genome browser
AA seq
1391 aa
AA seq
DB search
MNAITKSFTGRKRIRKSFGRIPEVAPMPNLIDVQRASYETFLQMNVAPDSRQQTGLQEVF
RSVFPINDFAGRGRLEFVSYELEEPKYDVEECIQRGLTYAAPLKVILRLIVWDVDEDTGS
RSIRDIKEQPVYMGDMPLMTDNGTFIINGTERVIVSQMHRSPGVFFDHDKGKTHSSGKYL
FAARVIPYRGSWLDFEFDAKDLIYVRIDRKRKLPVTTLLYALEGQHSIAARAAKVAEGGD
LESMAIRGMDQDEILAYFYGTVPFTRMPKGWARPFDPEAFRGMKLLEPLYDADTGEVVAE
ADAKLTARMVRKIAETTKDVLVGRADLLGRFMAQDLVNEETGEIYAEAGEELTEARLEAL
EESGVTELPMLAVDSSHGPWIRNTLAVDKNNRRDEALIDIYRIMRPGEPPTPETAEAMFQ
GLFFDADRYDLSAVGRVKMNMRLEVDAPDTMRVLRKEDILRAVKIMCELKDGRGQIDDID
NLGNRRVRSVGELMENQYRVGLLRMERAIRERMGSVDVDTVMPHDLINAKPAAAAVREFF
GSSQLSQFMDQTNPLSEVTHKRRLSALGPGGLTRERAGFEVRDVHPTHYGRICPIETPEG
PNIGLINSLSTYAKVNKYGFIETPYRLVQDGVLQAGWKYLSAMEEDKLIVAQADAAQDKE
TGRLTDELVSVRRSGDFRLVPPEQVTACDVSPKQLVSVAAALIPFLENDDANRALMGSNM
QRQAVPLVRADAPLVGTGMEAAVAHDSGATIVAKRNGVIDQIDGARIVVRATDEAGSTQG
VDIYRLRKYMRSNQSTCINQRPLVRVGDTVHAGDIIADGPSTELGELALGRNVLVAFMPW
NGYNFEDSILISERIARDDVFTSIHIEEFEVMARDTKLGQEEITRDIPNVGEEALRNLDE
AGIVYVGAEVNPGDILIGKVTPKGESPMTPEEKLLRAIFGEKASDVRDTSLKLPPGTSGT
IVDVRVFSRRGVDKDERAMAIERSEIERLTKDRDDERAIQERSFIARLRERLLNQTAAAG
FKGIRAGTVITDEVLDEQPRGAWRNITVTDDSVMSELETLRREFDAAVGKIQARFDSKVE
KLQRGDELPPGVMKMVKVFVAVKRKLQPGDKMAGRHGNKGVVSRVVPVEDMPFLEDGTPV
DLVLNPLGVPSRMNVGQILETHLGWACANIGQNIGKIADDYQRTGERKLELLESLRDVYG
DAVFESDIATLPNEQLLELTGNLRKGVPIATPVFDGASIPDIEDMLVKAGVDKSGQSQLI
DGRTGESFERRTTVGYIYMLKLHHLVDDKIHARSIGPYSLVTQQPLGGKAQFGGQRFGEM
EVWALEAYGAAYTLQEMLTVKSDDVSGRTKVYEAIVREQDDFEAGIPESFNVLIKELKSL
GLNVDLEQSGS
NT seq
4176 nt
NT seq
+upstream
nt +downstream
nt
atgaacgcaatcaccaaatcgttcacaggacgcaagcggattcgcaagagcttcgggcgg
atccccgaagtggcgccgatgcccaacctgattgacgtgcagcgcgcaagctatgagacg
ttccttcagatgaacgtggcgcctgacagccgtcagcagacgggtcttcaggaagtgttc
cggtcggtttttccgatcaacgattttgcgggacgtggccgtctcgagttcgtttcctac
gaactcgaagagccgaaatacgacgttgaagagtgcattcagcgcggtctgacctatgca
gcgccgctgaaggtcatcctgcgtctgatcgtctgggatgttgatgaagataccgggtcg
cgctcgatccgcgatatcaaggagcagccggtctatatgggcgacatgccgctcatgacc
gataacggcaccttcatcatcaacggtaccgaacgcgtcatcgtcagccagatgcatcgc
agccccggcgttttctttgatcacgacaagggcaagacgcattcttctggcaaatatctc
ttcgctgcccgcgtcatcccctatcgtggttcctggctcgatttcgagttcgacgccaag
gatctgatttatgtgcgtatcgaccgcaagcgcaagctgccggtcaccacactgctttat
gcccttgaaggccagcactctatcgcagcccgcgccgccaaggtagccgaaggtggcgat
ctcgagtccatggcgatccgtggcatggatcaggatgaaatccttgcctatttctacggc
accgtgcccttcacgcgcatgccgaagggatgggcgcgtccgtttgaccccgaagccttc
cgtggcatgaagctgcttgagccgctttatgatgccgatacgggtgaagtggttgccgag
gccgatgccaagctgacagcccgcatggtgcgcaagattgccgagacgaccaaggacgtg
ctcgtcggtcgtgccgatctactgggccgtttcatggcgcaggatctggtcaacgaagag
accggcgagatctatgccgaggctggcgaagagctgaccgaagcccgtctggaggccctt
gaggaatccggcgtgaccgagctgccgatgctcgccgtcgattcttcgcatggtccctgg
atccgcaacacgctcgccgtcgacaagaacaaccgtcgtgacgaagcattgatcgatatc
tatcgcatcatgcgtcccggcgagccgccgaccccggaaacggcagaagccatgttccag
ggccttttcttcgacgcagaccgctacgacctctcggccgtcggtcgcgtcaagatgaac
atgcgtctcgaagtcgatgcgccggacaccatgcgcgttctgcgcaaggaagacatcctg
cgcgccgtcaagatcatgtgcgagctgaaagacggccgcggccagatcgacgacatcgac
aatctcggtaaccgtcgcgttcgctctgttggcgagctgatggaaaaccagtatcgcgtc
ggcctgcttcgtatggagcgcgctattcgcgagcgtatgggttcggtcgatgtagatacg
gtcatgccgcatgacctgatcaacgcgaagcctgccgctgccgctgtgcgtgagttcttc
ggctcctcgcagctcagccagtttatggatcagaccaacccgctctccgaagtgacgcat
aagcgtcgtctttcggcgcttggcccgggcggtctgacccgtgagcgtgcaggcttcgaa
gtgcgcgacgttcacccgacgcattacggccgtatctgcccgatcgagacgcctgaagga
ccgaatatcggtctgatcaactcgctctcgacctatgcgaaggtgaacaagtacggcttc
atcgaaacgccgtatcgcctcgttcaggacggcgtgctgcaggctggctggaaatacctc
tccgctatggaagaggacaagctgatcgttgcgcaggccgatgccgcgcaggacaaggaa
acgggtcgtctgaccgacgagctggtttctgtccgtcgttcgggtgacttccgtcttgtg
ccgcctgagcaggtcacggcctgcgacgtctcgcccaagcagctggtttctgtcgctgcg
gcgctgattccgttccttgaaaacgatgacgccaaccgcgctctcatgggatcgaacatg
cagcgtcaggccgtgccgctggtgcgcgccgatgcgccgctggtcggaacgggcatggaa
gccgccgtggcccatgactcgggtgcgaccatcgttgccaagcgtaatggcgtgatcgat
cagatcgacggtgcccgtatcgttgtgcgtgcgaccgacgaagccggctcgacccagggc
gtcgacatctatcgtctgcgcaaatacatgcgctcgaaccagtccacctgcatcaaccag
cgtccgctggtgcgcgtgggtgacacggttcatgccggtgacatcatcgctgacggtccg
tccaccgagctgggcgaactggctcttggccgtaacgtgctcgtcgcgttcatgccctgg
aacggttacaacttcgaagattcgatccttatctccgagcgcattgcccgtgatgacgtc
ttcacctcgattcatatcgaggaattcgaagtcatggcccgcgacaccaagctgggtcag
gaagaaatcacccgcgacattccgaatgtcggtgaggaagctctgcgcaacctcgacgaa
gccggtatcgtgtatgtcggtgccgaggttaatccgggcgatatcctgatcggcaaggtc
acgcctaagggcgaaagcccgatgacgccggaagagaagcttctgcgcgccatcttcggc
gaaaaggcgtctgacgttcgcgatacctcgctcaagctgcctcccggcacgagcggcacg
atcgttgacgtgcgcgtcttctcccgccgtggcgtcgacaaggacgagcgtgccatggcc
atcgagcgttcggaaatcgagcgcctgaccaaggaccgtgacgacgagcgcgccattcag
gagcgcagcttcattgcccgtctgcgcgagcgtctgctcaatcagacggcagcagctggc
ttcaagggtatccgcgccggaacggtcatcaccgatgaggtgctcgacgagcagccgcgt
ggcgcctggcgcaacatcacggtcaccgatgacagtgtgatgtccgagctggaaacgctg
cgtcgtgaattcgatgccgccgttggcaagattcaggcccgcttcgacagcaaggtcgag
aagctgcagcgcggtgacgagctgccgccgggcgtgatgaagatggtcaaggtcttcgtt
gccgtgaagcgcaagcttcagccgggtgacaagatggccggtcgtcacggaaacaagggc
gtcgtctcgcgcgtcgtgccggtcgaagacatgccgttccttgaggatggcacgccggtc
gatctcgtgctgaacccgctgggcgtgccgtcgcgcatgaatgtcggtcagattctcgaa
acgcatctgggttgggcctgtgcgaatatcggtcagaacatcggcaagatcgccgatgac
taccagcgcaccggcgagcgcaagctcgaactgctcgagagcctgcgtgacgtctatggc
gatgccgtgttcgaaagcgatattgcgaccctgccgaacgagcagctgctcgagctgacc
ggtaatctccgcaagggcgtgccgatcgcaactccggttttcgacggcgcgtcgatcccc
gatatcgaagacatgctggtcaaggccggtgtcgataaatcgggtcagtcgcagcttatc
gacggccgcacgggtgaatccttcgagcgtcgcacgacggttggctacatctacatgctg
aagctgcatcaccttgtcgatgacaagatccatgcacgctcgatcggtccgtactcgctc
gtcacgcagcagccgctgggtggtaaggcgcagttcggtggtcagcgcttcggtgagatg
gaagtctgggctcttgaagcttacggcgctgcctacaccctgcaggaaatgctcaccgtc
aagtccgacgacgtctccggacgtacgaaggtctatgaggcgatcgttcgcgagcaggat
gatttcgaggccggtatccccgagagcttcaacgttctgatcaaggaactgaagtcgctc
ggcctgaatgtcgatctggagcagagcgggtcctga
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integrated database retrieval system
