Alpha proteobacterium HIMB5: HIMB5_00000560
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Entry
HIMB5_00000560 CDS
T02250
Name
(GenBank) DNA-directed DNA polymerase
KO
K02335
DNA polymerase I [EC:
2.7.7.7
]
Organism
apm
Alpha proteobacterium HIMB5
Pathway
apm03030
DNA replication
apm03410
Base excision repair
apm03420
Nucleotide excision repair
apm03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
apm00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
HIMB5_00000560
03410 Base excision repair
HIMB5_00000560
03420 Nucleotide excision repair
HIMB5_00000560
03440 Homologous recombination
HIMB5_00000560
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
apm03032
]
HIMB5_00000560
03400 DNA repair and recombination proteins [BR:
apm03400
]
HIMB5_00000560
Enzymes [BR:
apm01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
HIMB5_00000560
DNA replication proteins [BR:
apm03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
HIMB5_00000560
DNA repair and recombination proteins [BR:
apm03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA polymerase I
HIMB5_00000560
NER (nucleotide excision repair)
GGR (global genome repair) factors
HIMB5_00000560
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol_A
5_3_exonuc_N
DNA_pol_A_exo1
5_3_exonuc
DNA_polI_exo1
HHH_2
HHH_5
Motif
Other DBs
NCBI-ProteinID:
AFS46829
UniProt:
J9YS91
LinkDB
All DBs
Position
55993..58764
Genome browser
AA seq
923 aa
AA seq
DB search
MKKKSEDHYYLVDGSGYIFRAYYALPPLTRKSDGLPTGAVSGFCSMLFKLLEDSKSDQNL
QKPTHFAVIFDSARKTFRNEIYNDYKANRSEAPDDLAPQFEYIRKSVLAFNLPSVDLINY
EADDLIATYVEQILKKGSKVTIISSDKDLMQLYKKGVRIYDPMKNKFVSEEDVKNKFGVD
ADKVIDVQSLAGDSSDNVPGVPGIGVKTAAELINKYGNLEELLKNAHEIKQNKRRETLIE
NKDKAIISKKLVTLNNKAPVKQKLEEFKLQDIDKEKLYSFLREMEFNRLLSSAISAYGET
GFKNDKVDSIQKKDDKPISNKNYKLITKLDEIDKLVGEAEEAGEFAVDTETNSLDPHQAE
LVGISISTKIGKASYIPIGHKSKKYFKKDDVLKKLKPILEDSSIKKIGQNIKFDFIIFYY
QGIVLNSMEDTMLMSYVLDAGKNRHNMDTLSELHLGHKTISFKEIVGTGKKEINFSEVEI
EKAKDYAAEDADITYRLYKKFNKSLKVEKLVNIYENFEKPLIKILAFMEIEGIKIDSKFL
KTLSIKFEKKIIKLEKDIFKISKKEFNIASPKQLGEIIYNDLKIANLKKTKKGSFATSAS
VLEDLAFKGHEFPQLVLDWRQISKLKNTYSDTLPEHLNNKTNRIHTSFLLAATTTGRLAS
SDPNLQNIPIKTEDGRDIRKAFIADGNKTLISADYNQVEMRILADLADVRELKKAFKNDI
DIHSLTASQIFNVDIKKVNSDQRRKAKAINFGIIYGISQYGLAKQINVSNHEAEEFLNAY
FLKFPEIKIYMDSTIKFCRKSGYVNNIFGRRSHFNAINDKNYNIRNFQERAAINAPIQGS
ASEIMRLAMIRLNEKLSETKYKDCKILLQIHDELIFESPKKDVEKVCKLIRQEMSSVSES
EFHSFSTPLTVDVNVGDNWGVLH
NT seq
2772 nt
NT seq
+upstream
nt +downstream
nt
atgaaaaaaaaatctgaagatcattattatctagttgatggttctggatatatttttaga
gcttattatgctttgcctccactaactagaaaaagtgatggtcttcctacaggagctgtt
agtggtttttgcagcatgttatttaagttgttagaagattctaaatcagatcaaaatttg
caaaagcccactcattttgctgtaatttttgattctgctagaaaaacatttaggaatgaa
atttataatgattataaagctaatagatcagaagcacctgatgatttagcccctcaattt
gaatacattagaaaatctgttttagcttttaatcttccttctgtagatctaattaactat
gaagcagatgatttaatagccacttatgtagaacaaatattaaaaaaaggctcaaaagtt
acaattatctcttctgataaagatttaatgcagctctataaaaaaggggttcgaatttat
gatcccatgaaaaataaatttgtatcagaagaagatgtaaaaaataagtttggtgttgat
gccgataaggtaattgatgttcaatcacttgctggagatagtagtgataatgttccaggt
gtacctggaataggagtaaaaacagcagcagaattaattaataaatatggaaatttagaa
gagttactaaaaaatgctcatgaaataaaacaaaacaaaagacgtgaaacgttaatagaa
aacaaagataaagcgataatcagtaaaaagttagtcacactaaacaacaaagcgccagta
aaacaaaaattagaagaatttaagcttcaagatatagataaggaaaaactatactctttt
ttgagagaaatggagtttaacagactcttaagctccgcaatatctgcttatggagaaact
ggttttaaaaacgataaagttgattcaattcaaaaaaaagatgacaaaccaatatctaat
aaaaattataaattaattacaaaattagatgaaatagacaaacttgttggcgaggctgaa
gaagcaggtgaatttgcggtagatactgaaacaaattcattagatccacatcaagctgaa
ctagtaggtatatcaattagcacaaaaattggtaaagctagttatattccaattggtcat
aaatcaaaaaaatattttaaaaaagatgatgtcttaaaaaaattaaagccaattttggaa
gatagtagtattaaaaaaattggtcaaaacattaaatttgattttattattttctactat
caaggaattgttcttaattcaatggaagatactatgttgatgtcatatgttctagatgct
ggaaagaatagacacaacatggatactctttcagaattacatttaggtcataaaacaatt
tcatttaaagaaatagtaggaactggaaaaaaagaaattaattttagtgaggttgaaata
gaaaaggctaaagattatgcagctgaagatgctgatattacttacagactttataaaaaa
tttaataagagtttgaaggttgaaaaattagttaatatttatgagaattttgagaaacct
ctcattaagatcttagcttttatggaaattgaaggaattaaaatagatagtaagttttta
aagactttatctataaaatttgaaaaaaaaattattaagctagaaaaagatatatttaaa
atttcaaaaaaagaattcaatattgcttctcccaagcaacttggagaaattatttataat
gacttgaaaatagcaaatttaaaaaaaacaaagaaaggtagttttgcaacaagtgcatca
gtccttgaagatttagcatttaaaggacatgaatttccacagctagttcttgattggaga
caaatatcaaaactaaaaaatacttattcagatactttgcctgaacatttaaacaataaa
acaaatagaattcacacctcatttttactagctgcaacaaccactggccgtttagcttca
agtgatcctaatttacagaatattcctataaaaacagaagatggaagggacatcaggaaa
gcttttattgctgacggaaacaaaactttaatttctgctgactataatcaagtagaaatg
agaattttagctgacttggcagatgtaagagaattaaaaaaagcttttaaaaacgatatt
gatattcattcattaacagcaagtcaaatttttaatgtagatataaaaaaagtaaactca
gatcaaagaagaaaagctaaagctataaattttggaattatttatggaatttctcaatat
ggattggcaaaacaaattaatgtttcaaaccatgaagcagaagaatttcttaatgcttat
tttttaaagttcccagaaataaaaatttatatggatagtacaataaagttttgtagaaaa
agtggttatgtaaataatatttttggaagaagatcgcattttaatgcgataaatgataaa
aattataatataagaaattttcaagagagagctgctataaacgcacctattcaaggatct
gcctcagagataatgagattagctatgataagattaaatgagaaattatctgagactaaa
tataaagattgcaaaatactcttacaaattcatgatgaattaatttttgagtcacccaag
aaagacgtagagaaagtttgcaagttaatcagacaagaaatgtcaagcgtatcagaaagt
gagtttcattcattctcaacaccattaaccgtagatgtaaatgttggtgataattggggt
gtattacattaa
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