Alpha proteobacterium HIMB5: HIMB5_00001400
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Entry
HIMB5_00001400 CDS
T02250
Name
(GenBank) HhH-GPD superfamily base excision DNA repair protein
KO
K03575
A/G-specific adenine glycosylase [EC:
3.2.2.31
]
Organism
apm
Alpha proteobacterium HIMB5
Pathway
apm03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
apm00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
HIMB5_00001400
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
apm03400
]
HIMB5_00001400
Enzymes [BR:
apm01000
]
3. Hydrolases
3.2 Glycosylases
3.2.2 Hydrolysing N-glycosyl compounds
3.2.2.31 adenine glycosylase
HIMB5_00001400
DNA repair and recombination proteins [BR:
apm03400
]
Eukaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA glycosylases
HIMB5_00001400
Prokaryotic type
HIMB5_00001400
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HhH-GPD
HHH
SAM_BAF
HHH_5
Cas_Csa4
YrzO
HHH_8
DUF763
Motif
Other DBs
NCBI-ProteinID:
AFS46913
UniProt:
J9YTZ3
LinkDB
All DBs
Position
132539..133519
Genome browser
AA seq
326 aa
AA seq
DB search
MIESMISKKILKWYDLNKRDLPWRKKCSKSKKEYYTLISEFMLQQTQVATVIPYFNRFIK
ILPTIEKLSKVDNSKLFKLWEGLGYYSRARNLKKTAQVIVKKYNKKIPNNFEDLLSLPGI
GNYTASAILSIGFNKPYIPLDGNIERVLKRYLLLKKENQITKEYLNKTKSIFGTTRRSSD
YAQALMELGATICKPFNPVCDMCPINHNCKALIKKDFTLKKILKKNKKKFFVVNVHKKNN
KYFLIKNNTFNFLRNLKIFPMKEVRYDKRFKKHLNIKLSNMDMAIQIKKTEKKQNSPVHY
WIDPKKVEEIVLPSFTKRILKELETI
NT seq
981 nt
NT seq
+upstream
nt +downstream
nt
atgatagagtcgatgatatcaaaaaaaattctgaaatggtatgatttaaataaaagagat
ttgccgtggcgaaaaaagtgttccaaatcaaaaaaagaatattacacactcataagtgaa
tttatgttgcaacaaacacaagttgcaactgtaatcccatattttaatagatttatcaaa
atattaccaacgattgaaaaattatcaaaagttgataattcaaaattatttaaattgtgg
gaggggttaggttactattcaagagctaggaatctaaaaaaaacagcacaagttattgta
aaaaaatataataaaaaaattccaaacaatttcgaagatcttctctctttaccaggtatt
ggtaattatactgcaagcgcaattttatctattggttttaataaaccttatattccttta
gatggaaacatagagagagtacttaaaagatatcttttattaaaaaaagaaaatcaaatc
accaaagagtacttaaataagacaaaatcaatatttggaacaacaagacgttcaagtgat
tacgcacaagcactgatggaattaggagcaacaatttgcaaaccttttaaccctgtatgt
gatatgtgccctataaaccataattgtaaagcgttgataaaaaaagattttactttgaaa
aaaatcctaaaaaaaaataaaaaaaaatttttcgtagttaatgttcataaaaaaaataat
aaatattttttaataaaaaataatacatttaattttttgagaaatttaaagatatttcca
atgaaggaagtgcgatatgataaaagatttaaaaaacatttaaacattaaattatcaaat
atggatatggctattcaaattaaaaaaacagagaaaaaacaaaattctcctgttcattac
tggattgatccaaaaaaagttgaagaaattgttcttccatcttttacaaaaagaatattg
aaagaattggaaacaatatga
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