Alpha proteobacterium HIMB5: HIMB5_00001810
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Entry
HIMB5_00001810 CDS
T02250
Name
(GenBank) RNA polymerase, sigma 70 subunit, RpoD
KO
K03086
RNA polymerase primary sigma factor
Organism
apm
Alpha proteobacterium HIMB5
Brite
KEGG Orthology (KO) [BR:
apm00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
HIMB5_00001810
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
apm03021
]
HIMB5_00001810
Transcription machinery [BR:
apm03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
HIMB5_00001810
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
Sigma70_ner
Sigma70_r3
Sigma70_r2
Sigma70_r4
Sigma70_r1_2
Sigma70_r1_1
Motif
Other DBs
NCBI-ProteinID:
AFS46953
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Position
171429..173207
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AA seq
592 aa
AA seq
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MGRGTHRGFITYEELSKSLGKRNLSDENLAQAFIHILDENISLVEKKTDFKALRKKDNST
KEEGKTIEKSDDPIRMYLREMGGVELLSREGEIAIAKRIEAGKDVMLSALSQSPITAKQL
FEWNEKLQNDEILVREIIDIDTNYMEDENTGQSAKQKNSGEEEGTENEEDDFNPTLAAME
NEIKPKILKTVGALTKDYSKLIKYQKEKLNCILNSEIFSNSKEKTYEKIVNDILENIKSL
QLSPSVLEELVQKHYLENKKIISLEGNLLRLAMDQKISRNEFIKFYIGNEINPNLKKFLD
TNEEWKKFFLKNKNEFKNIRDRLVEISHKSGISVTDFKKIVSRVQKGEKESRIAKKEMVE
ANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITR
SIADQARTIRIPVHMIETINKIVRTQRIILSEFGREATPEELAKKLRMPLDKVRKVLKIS
KEPVSLEKPVGDEEDSSLGDFIEDTKALAPLEQAIKSNLGEATTKILSTLTPREERVLRM
RFGVGMNTDHTLEEVGLQFSVTRERIRQIEAKALRKLKHPSRSKQLKSFLES
NT seq
1779 nt
NT seq
+upstream
nt +downstream
nt
atgggtcgaggaactcacagaggctttattacttatgaagagttaagtaaatctttagga
aaaagaaacttatcagatgaaaatttagctcaagctttcatacatatcctagatgaaaat
atttccttagttgaaaaaaaaactgattttaaagctttaaggaaaaaagataactctaca
aaagaagaaggtaaaactatagaaaaaagtgatgaccctataagaatgtatttaagagag
atgggaggagtagagctcttatctagagaaggtgaaattgctatagcaaagagaatagaa
gcaggaaaagatgtaatgttaagtgcattatcacaaagcccaattactgcaaaacaatta
tttgaatggaatgaaaaacttcagaatgatgagatattagtaagagaaataatagatata
gatacaaactatatggaagatgaaaacacaggtcaaagtgcaaaacaaaaaaattcagga
gaagaagaaggtacagagaatgaggaagatgattttaatcccacacttgctgctatggaa
aatgaaattaaaccaaaaattttaaaaacagtaggtgcactaactaaagattacagtaaa
ttaattaaatatcaaaaagaaaaactaaattgtattttaaactctgagatattttctaat
tctaaagaaaagacatatgaaaaaatagttaatgatattttagaaaacataaaatctctt
caattatcaccttcagttctagaggaattagttcaaaaacattatttagaaaacaaaaaa
attatttctttagagggtaatcttttgagattagctatggatcaaaaaatatctagaaat
gaatttattaaattttatattggtaatgaaatcaatccaaatttaaaaaaatttctagat
acaaatgaagaatggaaaaagttttttttaaaaaataaaaatgaattcaagaacattaga
gatagattggttgaaataagtcacaaatcaggaatttcagtcacagactttaaaaaaatt
gtaagtagagttcaaaaaggcgaaaaagagtcaagaatagcaaaaaaagaaatggttgag
gcaaatttaaggttagttatttctattgcaaaaaaatacactaataggggacttcaattt
cttgatttaattcaagaaggaaatattggattaatgaaagcagtcgataaatttgaatat
cgaagaggatataaattttcaacatatgcaacttggtggattagacaagctattacacgt
tctatcgctgatcaagcaagaacaataaggataccagttcacatgattgaaacgataaat
aaaatagtaagaacgcaaagaataattttaagtgagtttggtagagaggcaacacctgaa
gagttagcaaaaaaattaagaatgccattagataaagtaagaaaagtattaaagatttct
aaagaaccagtgtctttagagaaaccagttggtgatgaagaagatagtagtttgggtgat
tttatcgaagacactaaagcattagctccattagaacaggcaataaaatcaaatctaggt
gaagcaactacaaaaattttatcaactttaacacctcgtgaagaacgagttttgagaatg
agatttggtgtgggtatgaacacagatcatacacttgaagaagttggcttacaattctct
gtgactagagaaagaataagacaaatagaggctaaagcacttcgtaaattaaaacatcct
agtagatctaaacaattaaaaagttttttagagagttaa
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