Alpha proteobacterium HIMB5: HIMB5_00005570
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Entry
HIMB5_00005570 CDS
T02250
Name
(GenBank) metallo-beta-lactamase family protein,RNA-metabolizing metallo-beta-lactamase
KO
K12574
ribonuclease J [EC:3.1.-.-]
Organism
apm
Alpha proteobacterium HIMB5
Pathway
apm03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
apm00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
HIMB5_00005570
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
apm03019
]
HIMB5_00005570
Messenger RNA biogenesis [BR:
apm03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
HIMB5_00005570
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_J_b_CASP
RMMBL
RNase_J_C
Lactamase_B
Lactamase_B_2
Motif
Other DBs
NCBI-ProteinID:
AFS47322
LinkDB
All DBs
Position
506416..508074
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AA seq
552 aa
AA seq
DB search
MKDEFLFCPLGGSGEIGMNMNLFGYGQPGNHKWIMVDIGVTFADDTIPGVDLIYPDPGFI
QERKENLLGIVLTHAHEDHIGAVAHLWPKLNCKIYATPFTAVLIREKFREKHIDITNDLQ
IVELNGKVDLNPFEVEYITLTHSILEPNGLKIKTPAGVVLHTGDWKVDPNPLIGDNINSK
RLKEIGDEGVLAMICDSTNVFSAGRSGSEADVRKNMLNIMNRLKKRIIITSFASNVARME
TAFYCAEKTGRQISLVGRSMHRIYKAAKQCGYLKNTIEPIDPREAKNISREKMVYLCTGS
QGEPMGAMMRISSYTHPDVFIEKGDAVIFSSKIIPGNEKKLYKLHNQLVKDGIEVISEES
EFIHVSGHPNREDLKDMYDWVKPKCVIPVHGEHRHMIEHINFAKEMQVPYPVQVENGDIV
KLAPGDKPEVYDKAPSGRLYLDGSVSVEEDSQSIKERKNLSANGYLEITIMVTPKGNIHN
NPIVSFKGLPIFEKEEFVYGMEDEIERTTRTFKLGSKQQEHNLIDALKIVCRKFSKEKTG
KKPYTNINIVKI
NT seq
1659 nt
NT seq
+upstream
nt +downstream
nt
atgaaagacgaatttttattttgccctttaggtggctctggtgaaataggtatgaacatg
aacttatttggttatggtcagccaggcaatcataaatggatcatggtagacattggggta
acgtttgcagatgatactataccaggtgttgacttaatttatcctgacccaggatttatt
caagaaagaaaagaaaatctcttggggattgttttaactcatgcacatgaagatcatatc
ggtgcagttgcgcatttgtggccaaaactaaactgtaaaatctacgcgactccatttaca
gctgttttaataagagaaaaatttagagaaaaacatattgatattacaaacgacttacag
attgtagaattaaatgggaaagttgatttgaacccttttgaggttgagtatattactttg
actcactcaattttagagcctaatggacttaagataaaaacaccagctggtgtagtttta
catacaggagattggaaagttgatcctaatcctttaattggtgacaatataaattccaaa
agattgaaagaaataggtgatgagggtgttcttgcaatgatttgtgattcaacaaatgtt
tttagcgctggaagatcaggatctgaagcagatgttagaaaaaatatgttgaatataatg
aacagattaaaaaaaagaataatcataacgtctttcgcttctaacgttgctagaatggaa
acagctttttattgtgcagaaaaaactggaagacaaatttctttagttggtagatcaatg
cacagaatttataaagcggcaaaacaatgtggatatttaaaaaatacaattgaaccaatt
gatccaagagaagcaaaaaatatttctagagaaaaaatggtttatctttgcacaggtagc
caaggagaacccatgggtgctatgatgagaatctcaagttacactcatcctgacgttttt
attgaaaaaggagatgctgtgatattttcatcaaaaattattcctggaaatgaaaagaaa
ctttataaacttcataatcaattggttaaagatggtattgaggttatttcggaggaaagt
gaatttatacatgtatcaggtcatccaaatcgagaagacttaaaggatatgtatgattgg
gtaaaaccaaagtgtgttattcctgtacatggagaacatagacatatgattgaacatatt
aatttcgcaaaagaaatgcaggtcccatatcctgttcaggtcgagaatggtgatatagta
aaattagctccaggagataaaccagaagtttatgataaagcaccaagtggtagattatat
cttgatggatctgtaagtgttgaagaagacagtcaatcaattaaagaaagaaaaaattta
agtgcaaatggatacttagaaattacaattatggttactcctaaaggaaatatacataat
aatcctatagtttcttttaaaggtcttccaatttttgaaaaagaggaatttgtatatggt
atggaagatgaaatagaaagaactaccagaactttcaaattaggaagtaaacaacaagaa
cacaatttgattgatgctcttaaaattgtttgcagaaaattttcgaaagagaaaactggt
aaaaaaccatatacaaatattaatatagttaaaatttaa
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