Alpha proteobacterium HIMB5: HIMB5_00009580
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Entry
HIMB5_00009580 CDS
T02250
Name
(GenBank) FAD-binding protein, DNA photolyase family,DNA photolyase
KO
K01669
deoxyribodipyrimidine photo-lyase [EC:
4.1.99.3
]
Organism
apm
Alpha proteobacterium HIMB5
Brite
KEGG Orthology (KO) [BR:
apm00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
apm03400
]
HIMB5_00009580
Enzymes [BR:
apm01000
]
4. Lyases
4.1 Carbon-carbon lyases
4.1.99 Other carbon-carbon lyases
4.1.99.3 deoxyribodipyrimidine photo-lyase
HIMB5_00009580
DNA repair and recombination proteins [BR:
apm03400
]
Eukaryotic type
SSBR (single strand breaks repair)
Direct repair
HIMB5_00009580
Prokaryotic type
HIMB5_00009580
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
FAD_binding_7
DNA_photolyase
Motif
Other DBs
NCBI-ProteinID:
AFS47710
LinkDB
All DBs
Position
879913..881337
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AA seq
474 aa
AA seq
DB search
MSSKAIVWIREDFRINLNPALSHACQNHNEVVALYIFNPKNFINKREAQLWWISKSLESY
SKELSNFNINLEIQKGDEIEVLSKIKKKDNITLYWNKIYEPEIINLGKKIRDNILLKNEI
NFKYFKGNILNEFQDVTKKDQTPFKVFTPFWRVAEEIYLNSVPSKNSKIKKMKKKFNYFK
DNINSKDLLPKKNWYKKFDKYWKISENESQNLLNDLIKNKINNYGTDRDIPSVSGTSKLS
PYIKHGQIHVENIYKKCSEIKPKNINIKKYTNELGWREFSHSLINYFPEMLKGNLRKEFD
RFPWVKNDKFLKAWKQGMTGYPIVDAGMRELYETGWMHNRVRMIVGSFLVKHLRIDWKEG
EKHFRNCLLDFNEANNVAQWQWVAGCGADAAPYFRIFNPILQGEKFDKAGLYVKKWVPEL
NKVPEKFIHKPWEMDIKYQTALDTIIGKNYPKPIVIHEDARAAALKAFQTLKKN
NT seq
1425 nt
NT seq
+upstream
nt +downstream
nt
atgtctagtaaagcaattgtatggattagagaagattttaggataaatttaaatccagca
ctttctcatgcctgtcagaaccataatgaagtggtcgcgttatatatttttaatccaaaa
aattttatcaataagcgtgaagctcaattgtggtggatttcaaaatcattagaaagttat
tcaaaagaattatctaattttaatatcaatttagaaattcaaaaaggtgatgagatcgaa
gtgctatctaagataaagaaaaaagataacataaccctatattggaataaaatttatgaa
ccagaaattattaatcttggtaaaaaaataagagataatattttattaaaaaatgaaatt
aattttaaatatttcaaaggtaatattcttaatgaattccaagatgttacaaaaaaagac
caaacaccatttaaagtttttacaccattctggagagttgcagaagaaatttatctaaat
tcagtaccatcaaaaaattcaaaaataaaaaaaatgaaaaaaaaatttaattactttaaa
gataacattaattccaaagatttattacccaaaaagaattggtacaaaaaatttgataaa
tattggaaaatttctgaaaatgagtcacaaaatttattaaatgatttaataaaaaataaa
attaataattatggaacagatagagatataccaagtgtaagtggaacttcaaaactctca
ccatatataaaacatggacaaattcatgtagagaatatttataaaaaatgttcagaaatt
aaacctaaaaatatcaatattaaaaaatatacaaatgagctcggttggcgtgagttctct
catagtttaataaattattttcctgagatgcttaaaggaaatttaagaaaagaatttgat
agatttccttgggttaaaaatgacaaatttttaaaagcctggaaacaaggaatgactggt
taccctatagttgatgctggtatgagagaattatatgaaactggatggatgcacaacaga
gtaagaatgattgttggatcttttttagtaaaacatttaagaattgactggaaagaaggt
gaaaaacatttcagaaattgtcttttagattttaatgaagccaataatgttgctcaatgg
caatgggttgctggatgtggggcggatgcagcaccctattttagaatatttaatccaatt
ttgcagggagaaaaatttgataaagcaggtctttatgtaaaaaaatgggtaccagaactt
aacaaagtaccagaaaaatttattcataaaccttgggaaatggatattaagtatcaaaca
gctttagacacaattattggaaaaaattatccaaaaccaatagtgatacatgaagatgca
agagctgcggctttaaaagcttttcaaactttaaaaaaaaattaa
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