Alpha proteobacterium HIMB5: HIMB5_00012930
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Entry
HIMB5_00012930 CDS
T02250
Name
(GenBank) AMP-binding enzyme
KO
K01897
long-chain-fatty-acid---CoA ligase [EC:
6.2.1.3
]
Organism
apm
Alpha proteobacterium HIMB5
Pathway
apm00061
Fatty acid biosynthesis
apm00071
Fatty acid degradation
apm01100
Metabolic pathways
apm01212
Fatty acid metabolism
apm02024
Quorum sensing
apm04146
Peroxisome
Module
apm_M00086
beta-Oxidation, acyl-CoA synthesis
Brite
KEGG Orthology (KO) [BR:
apm00001
]
09100 Metabolism
09103 Lipid metabolism
00061 Fatty acid biosynthesis
HIMB5_00012930
00071 Fatty acid degradation
HIMB5_00012930
09140 Cellular Processes
09141 Transport and catabolism
04146 Peroxisome
HIMB5_00012930
09145 Cellular community - prokaryotes
02024 Quorum sensing
HIMB5_00012930
09180 Brite Hierarchies
09181 Protein families: metabolism
01004 Lipid biosynthesis proteins [BR:
apm01004
]
HIMB5_00012930
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
apm04147
]
HIMB5_00012930
Enzymes [BR:
apm01000
]
6. Ligases
6.2 Forming carbon-sulfur bonds
6.2.1 Acid-thiol ligases
6.2.1.3 long-chain-fatty-acid---CoA ligase
HIMB5_00012930
Lipid biosynthesis proteins [BR:
apm01004
]
Acyl-CoA ligase
Long/very long chain acyl-CoA ligase
HIMB5_00012930
Exosome [BR:
apm04147
]
Exosomal proteins
Exosomal proteins of breast milk
HIMB5_00012930
Exosomal proteins of breast cancer cells
HIMB5_00012930
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AMP-binding
AMP-binding_C_3
AMP-binding_C
HMUD2
Motif
Other DBs
NCBI-ProteinID:
AFS48032
UniProt:
J9YYA3
LinkDB
All DBs
Position
complement(1188340..1190040)
Genome browser
AA seq
566 aa
AA seq
DB search
MNINRLNNLLELFYTQYQLSNKSEIFLTSLKQKKSFSWEDTFQSIIKLSSKISSIIQQGD
RCLLISENRPEWMISDLSIMLSKGITVPSYITYTERDYEYIINDCQPSLILVSNNELFKK
IKNLIKNNDFIKKIISFDQIEDKEIKIENINSIFAENNLKDINFLNLDIRRKDTSCIIYT
SGTQGDPKGVMLSHGGILNNCEGAYTLLKEFVSFKPHFLTWLPLSHSYEHTVQFVQMAVG
AKVFYAESIDKLIKNMGDCNPEIMTAVPRFYQNLYQKINSTFNKAEGFKKKIINTTINLG
KKKLERKNLNFVEQIQNFLCEILVRKKIKKQFGGSLKAFISGGGALDKEVGLFLNSIGLP
TLQGYGLTETSPVVSCNPIHDIRIETVGPPFPGNDVKIAEDGEILVKGENVIQGYWKKEK
ETKEILKDGWLYTGDIGVIEDGFLKITDRKKDILITPGGDNISPIKIENDLTKIDFIEQA
LVYGDGKPYLVALIVLNKEQHNQINNELIQKKIEIVNKNLSKVEMIKKFLVIKDQFTIEN
EMMTPTLKLKRFKIIKKYKEQLEKLY
NT seq
1701 nt
NT seq
+upstream
nt +downstream
nt
atgaatataaatagattaaataatcttttagaattattttatacgcagtatcaattaagt
aataagagtgagatttttttaacatctcttaaacaaaaaaaatctttctcatgggaagat
acattccaatcaataatcaaactttcatccaaaatttcttcaataatacaacaaggtgac
agatgtctattgatttctgaaaacaggccagaatggatgatttctgatttgtctataatg
ttatcaaaagggattacagtaccgtcctatattacttacacagaaagagactatgaatat
ataattaatgattgccaaccatcactaatattagtttctaataatgagttatttaaaaaa
ataaaaaatcttattaaaaataatgattttattaaaaaaataatttcgtttgatcaaata
gaagataaagaaattaaaatagaaaatattaactcaatttttgcagagaataatttaaaa
gatattaattttttaaatttagatattagaagaaaagatacttcatgtataatctatact
tcaggaacgcaaggtgacccaaaaggggtaatgttaagtcacggaggaatattaaataat
tgtgaaggagcctatactttactaaaagaatttgtttcctttaaaccacactttttaact
tggttaccattatcacattcatatgagcatacagttcaatttgtccaaatggctgttggt
gcaaaagttttttacgcagaaagtattgataagttgataaaaaatatgggtgactgtaat
cctgaaataatgacagccgttccaagattttatcaaaatttatatcaaaaaattaattca
acttttaataaagcggaaggatttaaaaaaaaaataattaatacaacaataaatctaggc
aagaaaaaattagaaagaaaaaatttgaattttgtagagcaaattcaaaatttcttatgc
gaaatattagtgagaaaaaaaataaagaaacaatttggaggatcgctcaaagcatttata
tctggagggggagctctagataaagaggttggcttattcttaaattcaataggattgcca
actttacaaggctatggactcactgaaacatcacctgttgtaagctgtaatccaattcat
gatataagaatagaaacagttggtcctccttttccaggaaatgacgttaaaatagcagag
gatggtgaaattcttgtaaaaggagaaaatgtaatacaaggatattggaagaaagaaaaa
gaaaccaaagaaattttgaaggatggctggttatatactggagatattggagttatagaa
gatggttttttgaaaataactgatagaaaaaaagatattttaatcacaccaggaggtgat
aacatttctcctattaaaattgaaaacgatttaacaaaaattgattttatagaacaagct
ttagtgtacggtgatggtaaaccatatttagtagcattaattgttttaaataaagaacaa
cataaccaaataaataatgaattaatccaaaaaaaaattgaaattgtaaataaaaattta
tctaaagttgaaatgataaaaaaatttttagttataaaagatcaatttacaattgaaaat
gaaatgatgacaccaacattaaagttaaaaagatttaaaataataaaaaaatacaaagaa
caattagaaaaactttattaa
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