Alpha proteobacterium HIMB5: HIMB5_00013090
Help
Entry
HIMB5_00013090 CDS
T02250
Name
(GenBank) formamidopyrimidine-DNA glycosylase Fpg
KO
K10563
formamidopyrimidine-DNA glycosylase [EC:
3.2.2.23
4.2.99.18
]
Organism
apm
Alpha proteobacterium HIMB5
Pathway
apm03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
apm00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
HIMB5_00013090
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
apm03400
]
HIMB5_00013090
Enzymes [BR:
apm01000
]
3. Hydrolases
3.2 Glycosylases
3.2.2 Hydrolysing N-glycosyl compounds
3.2.2.23 DNA-formamidopyrimidine glycosylase
HIMB5_00013090
4. Lyases
4.2 Carbon-oxygen lyases
4.2.99 Other carbon-oxygen lyases
4.2.99.18 DNA-(apurinic or apyrimidinic site) lyase
HIMB5_00013090
DNA repair and recombination proteins [BR:
apm03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA glycosylases
HIMB5_00013090
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
H2TH
Fapy_DNA_glyco
NFACT_N
zf-FPG_IleRS
DUF4905
Motif
Other DBs
NCBI-ProteinID:
AFS48047
UniProt:
J9YYC2
LinkDB
All DBs
Position
complement(1200392..1201255)
Genome browser
AA seq
287 aa
AA seq
DB search
MPELPEVEIVRLSLSKNIIGKKINKVLIRNRNLRFKLKFSFEKHLKNKFVINIYRFSKYL
IIELNDKSFCIIHLGMSGTIHILKKNKKNIYTNTSFYHSPGLPKKHNHVEISFNDLTLVY
NDPRRFGFFQIVKNKENLTNRFKNYGPEPFDKNFNLDYMANYFKDKKKDIKSFLLDQKFV
SGIGNIYANEILYLSKINPKIPVKKLKKTQFKLLIKNSKKVLLNAIKKGGSTIRDFKNTL
GDTGNFQKEFKVYGRQKLNCLRSNCTGVITKIVQSNRSTFLCKFCQK
NT seq
864 nt
NT seq
+upstream
nt +downstream
nt
atgccagaattaccagaagtagaaattgtacgtctatcattatcaaaaaatataattgga
aaaaaaatcaataaagttttgataagaaatagaaacttaagatttaagttgaagttttct
tttgaaaaacatttaaaaaataaatttgttataaacatttatagattttcaaaatatttg
attattgagctaaatgacaaaagtttctgcatcatacacctaggcatgtctggaactatt
catattttaaaaaaaaataaaaaaaacatatataccaatactagtttttatcattcacct
ggtttgccaaaaaaacataatcatgttgaaatttcctttaatgatttaactttagtttac
aatgatcctagaagatttggtttttttcaaatagtcaaaaataaagaaaatctcacaaat
agatttaaaaattatggaccagagccttttgataaaaactttaatttagattatatggcc
aattattttaaagataaaaaaaaagatattaaaagttttttattagaccaaaaatttgta
tcaggtattggtaacatctatgcaaatgaaattttgtatttatcaaaaattaatcctaaa
attccagtaaaaaaattaaaaaaaactcagtttaaacttttaataaaaaattcaaaaaaa
gttttattaaatgcgatcaaaaagggtggatccacaataagagattttaaaaatacttta
ggagatactggaaattttcaaaaagaatttaaggtgtatggaaggcaaaaacttaattgt
ttaagatcaaattgtactggtgtaattactaaaattgtccaatcaaatagatcaactttt
ctttgcaaattttgtcaaaaataa
DBGET
integrated database retrieval system
