Alpha proteobacterium HIMB5: HIMB5_00013260
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Entry
HIMB5_00013260 CDS
T02250
Name
(GenBank) polyribonucleotide nucleotidyltransferase
KO
K00962
polyribonucleotide nucleotidyltransferase [EC:
2.7.7.8
]
Organism
apm
Alpha proteobacterium HIMB5
Pathway
apm03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
apm00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
HIMB5_00013260
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
apm03019
]
HIMB5_00013260
03016 Transfer RNA biogenesis [BR:
apm03016
]
HIMB5_00013260
Enzymes [BR:
apm01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.8 polyribonucleotide nucleotidyltransferase
HIMB5_00013260
Messenger RNA biogenesis [BR:
apm03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
HIMB5_00013260
Transfer RNA biogenesis [BR:
apm03016
]
Prokaryotic type
tRNA degradation factors
HIMB5_00013260
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
RNase_PH_C
S1
PNPase
KH_1
OB_RRP5_4th
KH-I_KHDC4-BBP
S1_RRP5
KH_2
KH_KhpA-B
CsrA
Motif
Other DBs
NCBI-ProteinID:
AFS48064
UniProt:
J9YWI5
LinkDB
All DBs
Position
complement(1214307..1216379)
Genome browser
AA seq
690 aa
AA seq
DB search
MFKVYKKEIEVAGKKISLETGKIARQADGAIIAKCGETVVLATVVGAKKVNPDVDYFPLS
VNYQEKYYAAGKIPGGYFKREARPTESETLISRLIDRPIRPLFPDEFKNEVQLLPTVISY
DKENEADILSITASSAALAISGMPFLGPVGASRVGYIDGNYVLNPSKEELKKSKLDLVVA
GTKNAVLMVESEANGLTEEEMLNAVKFGHEGFVPVIETIEDLAKDCRKPEWVFEKKDLSE
VKKVLEDKFTDDLKKAFGTRDKQDRSNQISEITDKAKKLFEENENYTDLDVNSELKNLEK
RIVRTDILKNKNRIDGRGLSDVRPISCEVGILPRTHGSALFTRGETQAIVTTTLGTSDDE
QKIESLDGLQKERFMLHYNFPPFSVGETGRIGTGRREIGHGKLAWRAINSSLPSKESFPY
TFRIVSEITESNGSSSMATVCGASLALMDAGVPIKEPIAGIAMGLIKEGDDFSVLSDILG
DEDHLGDMDFKVAGTKDGITSLQMDIKITGITFEIMDQALKQAKDGRIHILGEMNKALSV
SRSDVGKHTPKMEKITVDKKDIAAVIGKGGATIREIVEVSGAKVDINDEGEVTVAAPDEE
SRNKAMQMIKDITAKAELNKIYSGKVMKIMEFGAFVNFLGKQDGLVHISELADKRVAKVT
DVVKEGDEVKVKVIGFDRGKVKLSIKQANS
NT seq
2073 nt
NT seq
+upstream
nt +downstream
nt
atgtttaaagtatataagaaagaaatagaagtagcaggaaagaaaataagtttagaaaca
ggaaaaatagcaagacaggcagatggagcaattattgctaaatgtggtgaaacagttgta
ttagcaactgttgtaggagctaaaaaagtaaacccagatgtagattattttccattatca
gtgaattatcaagaaaaatattatgcagctggaaaaatccctggtggatattttaaaaga
gaagcaagaccaactgaaagcgaaacattaatatcaagattaatcgatagaccgatcaga
ccgctgtttccagacgaatttaagaatgaagtacaattattaccaactgtaatttcatat
gataaagaaaatgaagcagatattttgtctattacggcttcttcagcagcattagcaatc
tctggtatgccatttcttggcccagttggagcatcaagagttggttatatagatggaaat
tacgttttaaatccatcaaaggaagagctcaaaaaatctaagttagatttagtagtagca
ggaaccaaaaatgctgttctaatggtcgagtcagaggcaaatggtttaactgaagaagag
atgttaaatgcagtaaagtttggtcatgaaggttttgtaccagtaattgagacaattgaa
gatcttgctaaagattgtagaaaaccagaatgggtttttgaaaaaaaagatctttcagaa
gttaaaaaagtattagaggataagtttacagatgatcttaaaaaagcttttggaacaaga
gataagcaagacagatcaaatcagatttctgaaataacagataaagctaaaaagttattt
gaagaaaatgaaaattatactgatctagacgttaattctgaacttaaaaatcttgagaaa
agaatagtaagaacagatattctaaaaaataagaatagaatagacggtagaggcctatca
gatgtaagaccaatatcatgtgaggttggaattttaccaagaacacatggttcagctcta
tttacaagaggagaaactcaggcaatagtaacaacgactcttggtacatccgatgatgag
caaaaaattgaaagtttagatggcttacaaaaagagcgatttatgcttcactataatttt
ccaccattttcagtgggagaaactggtagaataggaactggtagaagagaaattggacat
ggaaaattagcatggagagcgatcaattcatcattgccatcaaaagaatctttcccatat
acttttagaatagtatctgagatcacagaatctaatggctcttcatctatggctacggtc
tgtggtgcgtcactagcactaatggatgcaggggtaccaattaaagaacctatcgctggt
attgctatgggattgattaaagaaggtgatgatttttcagttttatctgacattttgggt
gatgaagatcatttaggtgacatggattttaaagtagctggaactaaggatggtattact
tctctacaaatggatattaaaattacaggcattacatttgagataatggaccaagcttta
aaacaagctaaagatggaagaattcatattcttggtgaaatgaataaagcactatcagtt
tctagaagtgatgttggaaaacatactcctaaaatggaaaaaattactgttgataaaaaa
gatattgcagcagtaattggcaaaggaggcgcaactattagagaaatagttgaagtttct
ggtgctaaagttgacattaatgatgagggcgaagtaacagttgctgcaccggatgaagag
tctagaaataaagcaatgcagatgattaaagatattactgcaaaagctgaacttaataaa
atttatagtggaaaagttatgaagattatggagtttggagcatttgtaaatttcttagga
aaacaagatgggcttgttcacatttcagagcttgcagataagagagtagcaaaggtaact
gatgttgttaaagaaggtgacgaggttaaagttaaagttatcggttttgacagaggaaaa
gtaaaactttctatcaaacaagcaaattcttaa
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