Pseudarthrobacter phenanthrenivorans: Asphe3_23660
Help
Entry
Asphe3_23660 CDS
T01435
Name
(GenBank) DNA-(apurinic or apyrimidinic site) lyase; Formamidopyrimidine-DNA glycosylase
KO
K10563
formamidopyrimidine-DNA glycosylase [EC:
3.2.2.23
4.2.99.18
]
Organism
apn
Pseudarthrobacter phenanthrenivorans
Pathway
apn03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
apn00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
Asphe3_23660
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
apn03400
]
Asphe3_23660
Enzymes [BR:
apn01000
]
3. Hydrolases
3.2 Glycosylases
3.2.2 Hydrolysing N-glycosyl compounds
3.2.2.23 DNA-formamidopyrimidine glycosylase
Asphe3_23660
4. Lyases
4.2 Carbon-oxygen lyases
4.2.99 Other carbon-oxygen lyases
4.2.99.18 DNA-(apurinic or apyrimidinic site) lyase
Asphe3_23660
DNA repair and recombination proteins [BR:
apn03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA glycosylases
Asphe3_23660
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Fapy_DNA_glyco
H2TH
DnaJ_CXXCXGXG
NFACT_N
HpcH_HpaI
Motif
Other DBs
NCBI-ProteinID:
ADX73500
UniProt:
F0M536
LinkDB
All DBs
Position
complement(2511637..2512602)
Genome browser
AA seq
321 aa
AA seq
DB search
MPELPEVEVVRRGLVSWVRGRTIEAVEVLDPRSIRRHALGAEDFTGNLEGATVADIVRRG
KFLWMPLVHPAAAAEGQGSIGRPEVALMAHLGMSGQLLMQDRGVPDEKHLKVRFRLSPRE
GMPEQLRFVDQRIFGGLFVTSLVPTDDGGPGGLAESQLPLIAEEASHIARDPLDPAFSFE
LFYRRLRKRKTGLKRALLDQGLVSGIGNIYADEALWRARLHFARPTDTLRRSEAERVVDS
AREVMLDALAAGGTSFDSLYVNVNGASGYFDRSLNAYGREGQPCKRCAAAGIHATIRRDQ
FMNRSSHTCPVCQPRPRNGRW
NT seq
966 nt
NT seq
+upstream
nt +downstream
nt
gtgcccgaacttcccgaggttgaagtagtccgccgcggcctggtgagctgggtccgtggc
cggaccatcgaggcggtggaggtcctcgatccccggtccatccgcaggcatgcactgggc
gcggaggatttcactggaaacctggaaggcgcaacagttgccgacatcgtgcggcggggc
aagttcctctggatgccgctcgtccatcctgctgctgcagcggaggggcaagggagcatc
ggccggccggaagtggcgcttatggcccacctggggatgagcggccaactcctcatgcag
gaccgcggcgttccggacgaaaagcacctcaaggtccgtttccggctcagcccccgtgag
gggatgcccgagcagttgcggttcgtggaccagcggatcttcggtgggctcttcgtcacg
tcgctggttcccacggacgacggcggcccgggcggcctcgccgagtcgcagcttcccctg
atagcggaggaagcgtcccatatcgcccgggacccactggacccggcgttctcattcgag
ctcttctaccgccgcctccgtaaacgaaagaccggcctgaaacgggcgctgctggatcag
gggctggtttcaggcatcgggaacatttacgcagacgaggctttgtggcgggcccgcctg
catttcgcccggcccaccgacaccctccgccggtcagaagcggaaagggtagtggacagc
gcccgggaggtcatgctcgacgcgctggccgccggcggaaccagcttcgattccctctac
gtgaatgtcaatggagcctcggggtacttcgaccgctccctcaacgcctacggccgggaa
ggccagccgtgcaaacgctgcgccgcagcgggaatccacgccaccatccggcgcgatcag
ttcatgaaccgttcctcgcacacctgcccggtttgccagccccgcccacggaacggccgc
tggtaa
DBGET
integrated database retrieval system
