Pseudarthrobacter phenanthrenivorans: Asphe3_24830
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Entry
Asphe3_24830 CDS
T01435
Name
(GenBank) transcription termination factor Rho
KO
K03628
transcription termination factor Rho
Organism
apn
Pseudarthrobacter phenanthrenivorans
Pathway
apn03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
apn00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Asphe3_24830
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
apn03021
]
Asphe3_24830
03019 Messenger RNA biogenesis [BR:
apn03019
]
Asphe3_24830
Transcription machinery [BR:
apn03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
Asphe3_24830
Messenger RNA biogenesis [BR:
apn03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
Asphe3_24830
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rho_RNA_bind
ATP-synt_ab
Rho_N
Spore_III_AA
Motif
Other DBs
NCBI-ProteinID:
ADX73613
UniProt:
F0M6M6
LinkDB
All DBs
Position
complement(2634348..2636534)
Genome browser
AA seq
728 aa
AA seq
DB search
MTETTELSPAVELSSSAAETAAPAKSSGLAGLKLAQLQALASQLGISGGSRMRKGDLVSA
ISAHRAGTPIAKAPAKAAAKATEIAAAPADSAPSAAQAAPATDTAEAPAEGTRARGRGRS
RRAVSDGVVAPAAEPAAETGAATPVEAPAAAEGTEGATERRQPRTRNRRRGEAAPQAAEA
EAPAEQPAVEQRGTEQRGTEQQRGTEQRSPEQRSSEERQEAAAEGAEAGQRTDRRDGGRT
RGRDNAGRDGGARDNADSGRDNAGSREAGQREGSRRDDNRDNDDSDGGSRRNRRNRRDRN
DRSGGQDRDNGSRNDRFRDRNDRRRGRAQGPDVDDVEITEDDVLLPVAGILDVLENYAFI
RTSGYLPGPNDVYVSLAQVKKYNLRKGDAVVGAIRAPRDGEDRSQQSNRQKFNALVRVTS
VNGKTPEELKDRVEFAKLVPLYPSERLRLETDPKKIGPRVIDLVAPIGKGQRGLIVSPPK
AGKTLILQSIANAITTNNPEVHLMMVLVDERPEEVTDMQRTVKGEVIASTFDRPADDHTT
VAELSIERAKRLVEMGMDVVVLLDSMTRLGRAYNLAAPASGRILSGGVDSAALYPPKRFF
GAARNIENGGSLTILATALVETGSKMDEVIFEEFKGTGNMELRLSRQLADKRIFPAVDVN
ASGTRREENLLSPEEVKIMWKLRRVLSGLETQQSLELLTNKIRETQSNVEFLMQVQKTTL
GAKSDNDK
NT seq
2187 nt
NT seq
+upstream
nt +downstream
nt
gtgaccgaaaccactgagctgtcgccagctgtggaactatcatcttctgctgccgaaacg
gcagcacccgccaagagcagcggcctggccggcctgaagctcgcccagctgcaggcgctt
gccagccagctcggtatttccggcggttcccggatgcgcaagggggacctggtttcggcc
atctccgcccaccgcgccggtactcccatcgccaaggcaccggccaaggcggccgccaag
gccacggagatcgccgccgctccggctgattccgcaccgtcggccgcccaggccgctcct
gcaacggacaccgccgaggcacctgccgaaggaacgcgggcacgtggccgtggccgcagc
cgccgtgcggtaagtgacggcgtagtggcaccagccgccgagccggctgccgaaaccggc
gccgccaccccggtggaagcccctgctgctgcagaaggcaccgaaggcgccaccgaacgc
cgccagccgcgcacccgcaaccggcgccgtggcgaagcagcaccccaggccgccgaagcc
gaggctcctgcagagcagcccgccgtcgaacagcgcggcactgaacagcgcggcacagaa
cagcagcgcggcacggagcagcgttcccctgagcagcgcagctccgaagagcgccaggaa
gctgccgctgaaggtgctgaggcaggccagcgcaccgaccgccgcgacggcggccgcacc
cgcggccgcgacaacgcaggccgcgatggcggtgcacgtgacaatgccgacagcggccgt
gacaacgccggcagccgcgaggcaggccagcgcgaaggaagccgtcgcgacgacaaccgc
gacaacgacgacagcgacggcggcagccgccggaaccggcgcaaccgccgtgaccgcaac
gaccggtcgggcgggcaggaccgtgacaacggctcacgcaacgatcgtttccgggaccgc
aacgaccgccgccggggccgtgcccagggacccgacgttgacgacgtcgagatcaccgaa
gacgacgtcctcctgccggttgccggcatcctggacgtgctggagaactacgccttcatc
cgcacgtccggctacctgcccggcccgaacgatgtctacgtttccctggcccaggtcaag
aagtacaacctccgcaagggcgacgccgtggttggcgccatccgcgccccccgtgacggg
gaagaccgcagccagcagtcgaaccgccagaagttcaacgccctggtccgcgtcacctcc
gtgaacggcaagaccccggaagagctcaaggaccgcgttgaattcgccaagctggtcccg
ctctacccctcggagcgcttgcgcctcgagaccgatcccaagaagatcggcccccgcgtc
atcgacctcgtggctcccatcggcaagggccagcgcggcttgatcgtctccccgcccaag
gccggtaagacgctcatcctgcagtccatcgccaacgcaatcaccaccaacaaccctgag
gtccacctcatgatggtgctggttgacgaacgccccgaagaagtcacggacatgcagcgc
accgtcaagggcgaggtcattgcctccaccttcgaccgtcccgccgacgaccacaccacc
gtggccgaactctccatcgaacgcgccaagcgcctcgtggaaatgggcatggacgtggtg
gtcctcctggattccatgacccgcctgggccgcgcttacaacctggcagcaccggcctcc
ggccgcatcctgtccggtggtgtggactccgcagccctctacccgcccaagcgcttcttc
ggcgccgcccgcaacatcgaaaacggcggctcactcaccatcctggccaccgccctcgtg
gagaccggatccaagatggacgaggtcatcttcgaagagttcaagggcaccggcaacatg
gagctccgcctgtcccgccagctggctgacaagcgcatcttcccggccgtggacgtcaac
gcatccggcacccgccgcgaggaaaacctgctctcgcccgaggaagtcaagatcatgtgg
aagctgcgccgtgtcctgtccgggctcgagacccagcagagccttgaactgctcaccaac
aagatccgggaaacccagagcaacgtcgagttcctgatgcaggtccagaagacgacgctt
ggtgcgaagtcggataacgacaagtag
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