Pseudarthrobacter phenanthrenivorans: Asphe3_28290
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Entry
Asphe3_28290 CDS
T01435
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
apn
Pseudarthrobacter phenanthrenivorans
Pathway
apn03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
apn00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
Asphe3_28290
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
apn03021
]
Asphe3_28290
03400 DNA repair and recombination proteins [BR:
apn03400
]
Asphe3_28290
Enzymes [BR:
apn01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
Asphe3_28290
Transcription machinery [BR:
apn03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
Asphe3_28290
DNA repair and recombination proteins [BR:
apn03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
Asphe3_28290
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Cluap1
DUF4407
Motif
Other DBs
NCBI-ProteinID:
ADX73945
UniProt:
F0MAL2
LinkDB
All DBs
Position
complement(3007241..3011140)
Genome browser
AA seq
1299 aa
AA seq
DB search
MSSESSFGLMQIGLATAEDIRGWSYGEVKKPETINYRTLKPEKDGLFCEKIFGPSRDWEC
YCGKYKRVRFKGIICERCGVEVTRAKVRRERMGHIELAAPVTHIWYFKGVPSRLGYLLDL
APKDLEKVIYFAAYMITSVDEAARHEELPNLQVEHDIEKKQLIDNRDSDIAAIARDLEGE
IARLEGEGAKAADKKKARDSADRQMANVRKRADADIERLEQVWDRFKNLKVADLEGDEGL
YRELRDRYGMYFEGSMGAEAIKKRLESFDMQAESDLLRDIIANGKGQRKTRALKRLKVVN
AFLTTNNSPLGMVLDAVPVIPPELRPMVQLDGGRFATSDLNDLYRRVINRNNRLKRLLDL
GAPEIIVNNEKRMLQEAVDSLFDNGRRGRPVTGPGNRPLKSLSDMLKGKQGRFRQNLLGK
RVDYSGRSVIVVGPQLKLHQCGLPKQMALELFKPFVMKRLVDLNHAQNIKSAKRMVERYR
PQVWDVLEEIITEHPVLLNRAPTLHRLGIQAFEPQLVEGKAIQLHPLVCGAFNADFDGDQ
MAVHLPLSPEAQAEARILMLSSNNILKPSDGRPVTLPSQDMIIGLYHLTTKRVGSAGEGR
IFGSVSEAIMAFDARELHLNSQVKIRLEGFVPYAGWEAPEGWEPGQPALVQTSLGQVLFN
ETLPEDYPWVEAVADKGELSRIVNDLAERYPKVVTAATLDNLKDAGFYWATRSGVTVAIS
DIEVPAAKPEILAGYEERAAKIQGQYDKGLIDDDERRQELIEIWNKATNEIAQAMRDSLS
PMNTINRMVSSGARGNWMQVRQIAGIRGLVANPKGEIIPRPIKSSYREGLSVLEYFIATH
GARKGLADTALRTANSGYLTRRLVDVSQDVIVREEDCGTERGLVTPIAVADSNGELVLDE
NVENSAYARTLAVDVVDSEGKVLAAAGTDCGDVVIDELFRAGITEVKVRSVLTCESSVGT
CALCYGRSLATGKTVDIGEAVGIIAAQSIGEPGTQLTMRTFHTGGAVSASGGDDITQGLP
RIQELFEARTPKGVAPIAEAAGRITIEESERQMRLVITPDDGTEEIAYPVLRRSRLLIED
GDHVTVGQKLINGPVDPKQVLRIMGPRAAQKFLVDEVQGVYRSQGIGIHDKHVEVIVRQM
LRRVTVIESGESDLLPGELAERSRFEDANRRVVSEGKTPASGRPELMGITKASLATESWL
SAASFQETTRVLTQAAMEGKSDPLLGLKENVIIGKLIPAGTGLPRYTEVTVEPTEEAKAN
LFTGPSAFSDFSYDTLGGDGAPEFHAIPLDDYDLGNDFR
NT seq
3900 nt
NT seq
+upstream
nt +downstream
nt
atgtccagcgaatcctccttcggcctcatgcagatcggcctcgccaccgcggaagacatc
cgcggctggtcgtacggcgaggttaagaagccggaaaccatcaactaccgcacgctcaag
cccgagaaggacggcctcttctgcgagaagatcttcggcccgtcccgggactgggaatgc
tactgcggcaagtacaagcgcgtgcgcttcaagggcatcatctgtgagcgctgtggcgtt
gaagtcacccgcgccaaggtccgccgcgaacgcatgggccacatcgagcttgccgctccc
gtcacgcacatctggtacttcaagggtgttccctcccgcctgggatacctccttgacctg
gcaccgaaggacctcgaaaaggtcatctacttcgccgcctacatgatcaccagcgtcgac
gaggctgcccgccacgaggaactgcccaacctgcaggttgagcacgacatcgagaagaag
cagctgatcgacaaccgcgactccgacatcgcggcgatcgcccgcgacctcgaaggcgaa
attgcccgcctggagggcgaaggcgcaaaggctgccgacaagaagaaggcccgcgactcc
gccgaccgccagatggccaacgtccgcaagcgtgccgacgccgacatcgagcgcctcgag
caggtctgggaccgcttcaagaacctgaaggtcgcagacctcgaaggtgacgaaggcctg
taccgcgaactgcgcgaccgctacggcatgtacttcgaaggctccatgggtgccgaagcc
atcaagaagcgtcttgaaagcttcgacatgcaggccgagtcggacctgctgcgcgacatc
atcgccaatggcaagggccagcgcaagacccgcgccctcaagcgcctgaaggtggtcaac
gcgttcctgaccaccaacaacagcccgcttggcatggtcctcgacgccgtcccggtgatc
ccgccggaactgcgtcccatggtccagctggacggtggccgcttcgcgacctccgacctc
aacgacctgtaccgccgcgtgatcaaccgcaacaaccgcctcaagcgcctgcttgacctg
ggtgctccggagatcatcgtcaacaacgagaagcgcatgcttcaggaagctgttgacagc
ctcttcgacaacggccgccgcggccgtccggtcaccggaccgggcaaccgtccgctgaag
tccctgagcgacatgctcaagggcaagcagggccgtttccgccagaacctcctcggcaag
cgcgtggactactccggccgttcggtcatcgtggtcggcccgcagctgaagctgcaccag
tgcggcctgcccaagcagatggcgctggagctcttcaagccgttcgtgatgaagcgcctg
gttgacctcaaccacgcccagaacatcaagtcggccaagcgcatggtggagcggtaccgt
ccgcaggtctgggacgtgctggaagagatcatcaccgaacacccggtgctgctcaaccgt
gcacctaccctgcaccgcctcggcatccaggccttcgagccgcagcttgttgaaggtaag
gcaatccagctccacccgctggtttgtggcgccttcaacgccgacttcgacggcgaccag
atggcagttcacctgcccctgagccccgaagcccaggctgaagcccgcatcctgatgctg
tcctcgaacaacatcctgaagccctccgacggacgtccggtcaccctgccttcgcaggat
atgatcatcggcctctaccacctgaccaccaagcgtgtcggttcagctggcgaaggccgc
atcttcggttcggtttcggaagccatcatggcgttcgatgcccgcgagctgcacctgaac
tctcaggtcaagatccgcctcgaaggcttcgtaccgtacgccggctgggaagctccggaa
ggctgggagccgggtcagcccgcgctcgtccagacctccctgggccaggttctcttcaac
gagaccctgcccgaggactacccctgggttgaggctgttgccgacaagggcgaactgtcc
cgcatcgtcaacgacctcgccgagcgctacccgaaggttgttaccgctgcaacgctggac
aacctgaaggatgccggtttctactgggccacccgctcaggcgtcaccgttgccatctcg
gacatcgaggttccggccgcaaagccggagatcctcgccggctacgaggagcgcgccgcc
aagatccagggccagtacgacaagggcctgatcgacgacgacgagcgtcgccaggaactg
atcgagatctggaacaaggcaaccaacgagatcgcccaggcgatgcgtgacagcctgtcc
ccgatgaacaccatcaaccgcatggtgtcctccggtgcacgtggtaactggatgcaagtc
cgccagatcgcgggtatccgcggcctggtggccaacccgaagggtgaaattattccccgt
ccgatcaagtcctcgtaccgcgagggcctgtccgttctggaatacttcatcgccacgcac
ggtgcccgtaagggtctggctgacaccgctctccgtaccgccaactcgggttacctgacc
cgtcgtctggtggacgtatcgcaggacgtcatcgttcgcgaagaggactgcggcacggag
cgtggcctggtcacgcccatcgccgtcgccgattccaacggtgagctggtcctggacgag
aacgtcgagaacagtgcctacgcacgtaccctcgccgtcgacgtcgtggactccgagggc
aaggtcctggccgctgccggcaccgactgcggcgacgttgtcatcgacgagctgttcagg
gcaggcatcaccgaggtcaaggtccgctccgtactcacctgtgagtccagcgtcggaacc
tgtgcactgtgctacggccgttcgctggccaccggcaagaccgtggacatcggcgaggcc
gtgggcatcatcgccgcacagtccatcggtgagcccggtacccagctgaccatgcgcacg
ttccacaccggtggtgctgtttccgccagcggtggcgacgacatcacccagggtctgcct
cgtatccaggagctcttcgaagcccgtactccgaagggtgtcgcaccgattgcggaagca
gccggccgtatcaccatcgaagagtccgagcgccagatgcgcctggtcatcaccccggat
gacggaactgaagagatcgcctacccggtccttcgccgttcacgcctgctgatcgaggat
ggcgaccacgtcaccgtcggccagaagctgatcaacggaccggtggatcccaagcaggtc
ctgcgcatcatgggtccgcgtgcggcacagaagttcctggtggacgaggtccagggcgtg
taccgcagccagggcatcggtatccacgacaagcacgtcgaggttatcgtccgccagatg
ctgcgccgcgtcactgtcatcgagtccggcgaatcggacctgctgcccggcgagctcgcc
gagcgcagccgcttcgaggacgccaaccgccgcgttgtgtccgagggcaagactccggct
tccggacgtcctgagctcatgggcatcaccaaggcgtcgctggccaccgagtcctggctg
tccgcagcttccttccaggagaccacccgcgtcctgacgcaggcggccatggaaggcaag
agcgatccgctgctgggcctcaaggagaacgtcatcatcggtaagctgatcccggccggc
acgggcctcccgcgctacaccgaggtcaccgtggagcccactgaagaagcaaaggccaac
ctgttcaccggccccagcgcattcagtgacttctcgtacgacaccctgggcggcgacgga
gctcctgagttccacgccatcccgctggatgactacgacctgggcaacgacttccgctag
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integrated database retrieval system
