Pseudarthrobacter phenanthrenivorans: Asphe3_28830
Help
Entry
Asphe3_28830 CDS
T01435
Name
(GenBank) DNA/RNA helicase, superfamily II
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
apn
Pseudarthrobacter phenanthrenivorans
Pathway
apn03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
apn00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Asphe3_28830
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
apn03019
]
Asphe3_28830
03009 Ribosome biogenesis [BR:
apn03009
]
Asphe3_28830
Enzymes [BR:
apn01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
Asphe3_28830
Messenger RNA biogenesis [BR:
apn03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
Asphe3_28830
Ribosome biogenesis [BR:
apn03009
]
Prokaryotic type
rRNA helicases
Asphe3_28830
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
CMS1
UvrA_inter
Cas3-like_C_2
Motif
Other DBs
NCBI-ProteinID:
ADX73996
UniProt:
F0MAR3
LinkDB
All DBs
Position
complement(3061170..3063302)
Genome browser
AA seq
710 aa
AA seq
DB search
MPENHNDATAETATASIEFTEPAAPAAEAAPAPAETPEAAPAEAPAKVEEAPAAPAAKAE
DDEEEGIKFADLGIDGRVLAALQDVGYEKPSPIQAATIPLLLEGRDVVGLAQTGTGKTAA
FAVPALSRLAELHDLNGPSRKTQALVLAPTRELALQVAEAFTSYAKHIDDFTVLPVYGGS
AYGPQLAGLRRGAQVVVGTPGRVIDHISKGSLDLSELQYLVLDEADEMLRMGFAEDVEQI
FQQTPSDRQVALFSATMPSQIRRMSKQYLNNPAEISVKSKTTTGANTRQRYLQVMGPHKL
DAMTRILEVEEFDGVIAFVRTKMATEDLADKLKSRGFQAAAINGDIPQQQRERTVDALKE
GRIDILVATDVAARGLDVERISHVINYDIPHDTESYVHRIGRTGRAGRSGDAILFMTPRE
KYLLRSIEKATRQPVEQMHLPTAETVNTLRLGKFAERITETLASEDVAPFRDLIASYEEE
HNVPASEIAAALAVMAQGGQPLLVKELPAAPEFQKRERSKDGFGSRGPTRALTEGNATYR
IAVGRRQRVMPGSIVGAIANEGGISSAQIGGIDIRSDHSLVELPADLSPEQLRALSRTRI
GGELIHLELDNGRKPSGERGSYQGNRGGDRGGNFKGNGGFKKEFRKNDGERSSADRGGRS
YSERSSFGADSGASRGQASDSRFGGHGDGSRKPRHGNEGGQRDFNRKGKW
NT seq
2133 nt
NT seq
+upstream
nt +downstream
nt
atgcccgaaaatcacaacgacgccactgctgagacagcaactgccagcatcgaattcacc
gagcccgctgctcccgcagccgaggccgctccggcacccgccgaaacccctgaagcagct
cctgccgaagcccccgcaaaggttgaggaagcccccgccgctcccgccgccaaggctgag
gacgacgaggaagagggcatcaagttcgccgacctcggcatcgacggccgcgtcctcgcc
gccctgcaggatgtcggctacgaaaagccttcccccatccaggcagcaaccatcccgctg
ctgctcgaaggccgcgacgtcgtgggcctcgcccagaccggcaccggtaagactgcagca
ttcgcagtaccggcactgtcccgcctggccgagctccacgacctcaatggcccgtcccgc
aagacccaggccctggtcctggctcccacccgtgagctggccctccaggttgccgaggcc
ttcacctcgtatgccaagcacatcgacgacttcaccgtcctccccgtgtacggcggctcc
gcctacggcccccagctcgccggcctgcgccgcggtgcccaggttgtcgtcggtaccccc
ggccgcgtgatcgaccacatctccaagggttccctggacctgtccgagctccagtacctg
gtgctggatgaggccgacgagatgctgcgcatgggcttcgccgaagacgtggagcagatc
ttccagcagaccccgtccgaccgtcaggttgcgctgttctcggccaccatgccgagccag
atccgccgcatgtccaagcagtacctgaacaacccggccgagatctccgtcaagtccaag
accaccaccggcgccaacacccggcagcggtacctgcaggtcatgggcccgcacaagctc
gacgccatgacccgcatcctcgaagttgaagagttcgacggcgtcatcgccttcgtgcgc
accaagatggctaccgaggacctggctgacaagctgaagtcccgcggtttccaggccgct
gcgatcaacggcgacattccgcagcagcagcgcgagcgcaccgtggacgcactgaaggaa
ggccgcatcgacatcctcgtggccaccgacgtcgccgcccgtggccttgacgtggagcgc
atcagccacgtcatcaactacgacatcccgcacgacaccgagtcctacgtgcaccgcatc
ggccgcaccggccgtgcaggccgttccggcgacgccatcctgttcatgacgccgcgtgag
aagtacctgctgcgttccatcgagaaggccacgcgccagccggtggagcagatgcacctg
cccacggcggaaaccgtgaacaccctccgcctgggcaagttcgccgagcgcatcacggaa
actctggcctccgaggacgtggctccgttccgcgacctcatcgcctcctacgaggaagag
cacaacgtgcccgcctcggagatcgccgcagcccttgccgtcatggcgcagggcgggcag
ccgctcctggtcaaggaactgccggcagctccggagtttcagaagcgcgagcgctccaag
gacggcttcggctcccgcgggcccacccgcgcgctcaccgagggcaacgctacgtaccgg
atcgcggtgggacgccgccagcgcgtcatgcccggctccatcgtgggcgccattgccaac
gagggcggcatctcctcggcacagatcggcggcatcgacatccgctcggaccactccctg
gtggagctcccggcggacctgagccccgagcagctgcgggcactgtcccgcacccggatc
ggcggcgagctgatccacctcgaactggacaacggccgcaagccctccggcgagcgcggc
tcctaccagggcaaccgcggcggagaccggggcggcaacttcaagggcaacggcgggttc
aagaaggaattccggaagaacgacggcgagcgctcctctgcggaccgcggaggccgctcg
tacagcgagcgttcctcctttggtgccgacagcggtgccagccgcggccaggccagcgac
tcccgcttcggcggccacggtgacggctcccgcaagccccgccacggcaacgagggcggc
cagcgggacttcaaccgcaagggcaagtggtaa
DBGET
integrated database retrieval system
