Pseudarthrobacter phenanthrenivorans: Asphe3_29420
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Entry
Asphe3_29420 CDS
T01435
Name
(GenBank) uncharacterized conserved protein
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
apn
Pseudarthrobacter phenanthrenivorans
Brite
KEGG Orthology (KO) [BR:
apn00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
apn03016
]
Asphe3_29420
Enzymes [BR:
apn01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
Asphe3_29420
Transfer RNA biogenesis [BR:
apn03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
Asphe3_29420
Prokaryotic type
tRNA splicing ligases
Asphe3_29420
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
CDCA
Motif
Other DBs
NCBI-ProteinID:
ADX74054
UniProt:
F0MBB7
LinkDB
All DBs
Position
complement(3123804..3124970)
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AA seq
388 aa
AA seq
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METINSKLLNWASILDAQTREQAVMTAGLPFIYPHLALMPDAHLGKGATVGSVIPTLHAI
IPAAVGVDIGCGMIAVRTQYSLADLPKDRKKLREDIERVIPLSAGHNNRSVLPTAEPRIA
ELKRLAAKADFNPSRYVEKWELQLGSLGSGNHFIEICADESDGVWLFLHSGSRGVGNKIA
QHHIGVAQQVSRKHQVRLPHPDLAYLDEGTPQFDRYMAELRWAQHFALLNREEMMDRVAT
QFGHWVGGRVQELERINCHHNFTQRETHYGRSVWVSRKGAIKAEHGDPGLIPGSMGTASY
VVEGRGNPASLNSSPHGAGREYSRNAARKTFSLDELKKAMRGIEFRASEAFIDEIPAAYK
PIDQVMHDAADLVTVRHKLRQLVNVKGN
NT seq
1167 nt
NT seq
+upstream
nt +downstream
nt
atggaaaccatcaacagcaagctcctcaactgggcttccatcctggatgcccagacccgg
gagcaggcagtgatgacggccggactgccgttcatctacccgcacctggccctcatgccg
gatgcccacctgggcaaaggggccaccgtgggctcggtcattcccacgctgcatgccatc
atcccggcggcagtgggagtggacatcggctgcggcatgatcgccgtccggacccagtat
tccctggcagacctgcccaaggaccggaaaaagctccgggaggacatcgagcgtgtcatt
ccactctccgccggccacaacaaccggagcgtcctgcccaccgccgagccccggatcgcg
gaactgaaacggctggccgccaaagccgacttcaacccgtcccgctacgtggaaaagtgg
gagctgcagctcggttcccttggctccggcaaccacttcatcgagatctgcgcggatgag
tccgacggcgtctggctgttcctgcactccggttcgcgcggcgtcgggaacaagatcgcc
cagcatcacattggcgtggcccagcaggtgtcccggaaacaccaggtccgcctgccgcac
ccggacctcgcctacctggacgagggcacgccgcagttcgacaggtacatggctgagctg
cgctgggcccagcacttcgccctcctcaaccgcgaggagatgatggaccgcgtggccacc
cagttcggccactgggtgggcggccgggtgcaggaactcgagcggatcaactgccaccac
aacttcacccagcgggagacccattacggcaggtccgtgtgggtgtcgcgcaaaggcgcc
atcaaagccgagcacggcgatccgggacttattccggggtccatggggacggcgtcgtac
gtggtggaaggccgcggcaaccctgcctcactgaactcctccccgcacggggcagggcgc
gaatactcccgtaacgcggcacggaaaaccttctcccttgacgagctgaagaaggccatg
aggggcatcgaattccgcgcgtcggaggccttcatcgacgagattccggccgcgtacaaa
cccattgaccaggtaatgcacgacgccgccgacctggtcactgtccggcacaaactgcgg
cagctggtcaatgtcaaggggaactga
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