Archaeoglobus profundus: Arcpr_0802
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Entry
Arcpr_0802 CDS
T01152
Name
(GenBank) protein of unknown function UPF0027
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
apo
Archaeoglobus profundus
Brite
KEGG Orthology (KO) [BR:
apo00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
apo03016
]
Arcpr_0802
Enzymes [BR:
apo01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
Arcpr_0802
Transfer RNA biogenesis [BR:
apo03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
Arcpr_0802
Prokaryotic type
tRNA splicing ligases
Arcpr_0802
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
LAGLIDADG_3
Intein_splicing
Motif
Other DBs
NCBI-ProteinID:
ADB57865
UniProt:
D2RHU0
LinkDB
All DBs
Position
689344..692229
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AA seq
961 aa
AA seq
DB search
MGFESLFRKITDYKWELPKSYKPGMRVPAVFYISRKLMQLLEKDAVEQAANVATLPGIQK
ASLVMPDVHVGYGFPIGGVAGFDVEEGVISPGGVGFDINCLSPNSSILTEHGYWIKIEDL
PANGENVKVYDVEEGHNDSGELAFVSARSADDKAIRITTEFGRVLEGSSDHPVLTRKGYK
NLGEIKEGDEVVVYPFEGVEFEQFEGTILNEDDFKDYDAQIVRYLRERKLIPLRYEDKRI
GTIARLLGFAFGDGCIVKSGKRLTLEFYGKLETLEEVAKDLESLGVKASKAYSRRRHLKI
RSPYSEYYSDCTDCRIRVTARSFAILMHKLGLPIGKKTEQPYRIPDWIKKAPLWVKRNFL
AGLFGADGSKVVFKGYTPLPINITQSKSKELESNLREFMEDIKGLLKEFEIESTIYEVKS
LEGSVTLRLAIVGEENVRKFLAKIGYEYSREKKELGLLALEYLKRKNLIKELRAKAIESA
REIHERTGSLKNACAVCCEYVNRRLVERALYENVEDVRVPENFPTFEEFVERFGASGGFV
YDRVVKVEIVEPKYDLFYDIGVLHKAHNFIANGIVVHNCGVRLIRSNLTVDEVRPKIKEL
IDELFVAVPSGVGSEGRLRVSDRELNEILVEGARWAVENGYGYEKDLEHCEENGAMEGAK
PEVVSRTARERGKPQLGTLGSGNHFLEVQYVEKIYDEECAKAMGLEEGMVTVMVHCGSRG
LGHQVCSDFLVVLDRAVRKYGIKLPDRQLACAPINSKEGQDYFGGMAASANYAWCNRQII
THWVRETFQKVFRMSEDDLGMELVYDVAHNIAKFETHKVDGKKMKLCVHRKGATRAFGPG
HPDIPKDYQKIGQPVLIPGSMGTPSYVLVGTEKAMEETFGSTCHGSGRVMSRAAAKRRLR
GDQVKNRLLKQGIYVRATHGALLAEEAPEAYKMSDDVVEVVHRAGISKIVARLRPLGVAK
G
NT seq
2886 nt
NT seq
+upstream
nt +downstream
nt
atggggtttgaaagcttattcagaaagattacggattacaagtgggagttacccaaaagt
tacaaaccagggatgagagttccagcagtattctacattagccgaaagctcatgcaactt
ctcgagaaggatgcagttgagcaagcagcgaacgttgcaactctaccaggcatccaaaag
gcaagcttagttatgccagacgtccacgtcggctacggttttccgattggaggcgtagct
ggatttgacgttgaggagggtgttattagccctggaggtgtaggtttcgacataaactgt
ctgtctcctaattcaagcatcttgacagaacacggatactggatcaagatagaagactta
cccgcaaatggagagaatgtaaaggtttacgatgttgaggagggacacaacgactctgga
gaactcgcattcgtttctgcaaggagtgcggatgataaggccataaggataacgacggag
tttggaagggttttggaaggtagttcagatcatccagttttgacgagaaaaggatacaag
aatcttggagagattaaagaaggcgacgaagttgtagtatatccgtttgaaggagtcgag
ttcgaacaatttgaaggaactattctaaatgaggacgatttcaaagattacgatgcgcaa
atcgtaagatatcttagagaaagaaaattgataccgttgagatacgaagacaagagaatt
ggaacgattgcgaggttgttgggatttgcatttggagatggttgcattgtaaagagtggt
aaaaggttgaccttagagttctacggtaaattagaaacgcttgaagaagtagctaaagac
cttgaaagcttgggtgtgaaagcttcaaaggcttattcgagaaggagacatttaaagata
agaagtccgtattcagaatactacagtgattgcacggattgtaggataagggttacagca
agatcgtttgcgatactaatgcacaaactcggcttaccgataggtaaaaagactgaacaa
ccttacagaattccagattggatcaagaaagcaccgttatgggttaagaggaacttctta
gctggactattcggagcggatggtagtaaggttgtcttcaaaggatacacaccgttaccg
ataaatataacacagtcaaagtcgaaagaacttgaatcgaacctcagagaatttatggag
gacattaaaggcctacttaaagaattcgaaattgaaagcacgatctacgaagtgaaatct
ttggaaggctcggtaacgctcaggcttgcaatcgtcggagaagaaaacgtaaggaaattc
ttggctaagattggatacgagtattcaagagagaagaaggagttgggtttgctcgctttg
gaatatctgaaaaggaagaatttaatcaaagagctaagagctaaagcaatcgaatctgca
agggaaattcacgagagaactggaagcttgaagaatgcatgtgcagtttgttgtgaatat
gtaaacagaagacttgtagagagagcgttgtatgaaaatgtagaggatgttagagtcccg
gaaaacttcccgacatttgaagagttcgttgaaaggtttggagcttctggtggattcgtc
tatgacagggttgtaaaggttgaaatcgtagaaccaaaatacgacttgttctacgacatt
ggcgtgctacacaaagcacacaacttcatagctaacggtatagtcgttcacaactgtgga
gtaaggttaattcgttcgaatttgactgtagatgaggttagaccgaaaattaaggagctt
atagatgagttgttcgtagccgttccttcgggtgttggaagtgaaggtaggttgagggtt
agcgatagagaacttaacgagattttggttgagggtgctagatgggctgttgagaatgga
tacggctacgagaaggatttggagcactgcgaggagaatggagcaatggaaggagcaaaa
ccagaagtagtaagcagaacggcgagagaaagaggcaaaccacagcttggaactttgggt
agcggaaatcacttcttggaggtgcaatacgttgaaaagatctatgatgaggagtgtgcc
aaagcgatgggcttggaggagggaatggttaccgtaatggtccactgcggaagcagaggt
ttgggacatcaggtttgtagtgacttcttggtcgtgctcgatagagcggtaaggaaatac
ggaataaagctcccagacaggcagttggcatgtgcaccgataaacagcaaggagggacaa
gattactttggaggtatggccgcatcagccaactacgcttggtgtaacaggcagataatc
actcactgggtaagggaaaccttccagaaggtctttagaatgagtgaggatgatttggga
atggagctagtttacgatgttgcacacaacatagccaagtttgaaacgcacaaagttgac
ggcaagaagatgaagctctgtgtccacagaaagggagctacgagggctttcggcccagga
catccagatattcccaaagactaccaaaagattggtcagccagtcctaataccgggttca
atgggaacaccaagctatgtgctcgttggaactgaaaaagctatggaggaaaccttcgga
tcaacatgccacggaagtggtagagttatgagcagagctgcagcaaagaggaggttgaga
ggagatcaggtgaagaacagactactgaagcaaggtatatacgttagagcaacacacggt
gcacttcttgctgaagaggctccagaggcttacaagatgagcgacgatgtcgttgaagtt
gtgcatagagccggaatttcaaaaatagttgcaagattaagacccttaggcgttgctaag
ggttaa
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