Arthrobacter polaris: J0916_16560
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Entry
J0916_16560 CDS
T08694
Name
(GenBank) ATP-dependent DNA helicase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
apoa
Arthrobacter polaris
Pathway
apoa03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
apoa00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
J0916_16560
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
apoa03019
]
J0916_16560
03400 DNA repair and recombination proteins [BR:
apoa03400
]
J0916_16560
Enzymes [BR:
apoa01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
J0916_16560
Messenger RNA biogenesis [BR:
apoa03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
J0916_16560
DNA repair and recombination proteins [BR:
apoa03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
J0916_16560
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
RecQ_Zn_bind
HTH_IclR
DacZ_P
Motif
Other DBs
NCBI-ProteinID:
UIK90789
LinkDB
All DBs
Position
4022370..4024568
Genome browser
AA seq
732 aa
AA seq
DB search
MQPSPDASATVHTAYSPDSWTPSAAGLRPTTRGQALEVLRALVGRADADFHDGQFEAIEA
LVDSSRRALVVQRTGWGKSAVYFVASLLLRGRGAGPTLIVSPLLALMRDQVAAAERAGVR
AMAINSANATEWGEISAALAADEVDVLLVSPERLTNPSFRENQLPSLIQRTGLLVVDEAH
CISDXGHDFRPDYRRIADLIAQLPSSVPVLATTATANSRVVADIEEQLGAGVFTIRGPLA
RKSLRLGVLRLADSRDRLGWLLTHLAELPGSGIIYTLTVSAAEDTARLLSGAGHVVKAYT
GRTDTMERESLEEALXNNQVKALVATSALGMGFDKPDLGFVVXLGAPSSPVAYYQQVGRA
GRGSANADVLLLPGSEDAEIWRYFATASMPAQDKAMAVLTALGESPKPMSXPALEARVDL
RRTPLELLLKVLAVDGAVRRVAGGWESTGQPWTYDEERYRRITQARVDEQQSMIEYERMS
GCRMEYLAAALDDDTAAPCGRCDNCTGRWFSAEVTSSASEAAGESLRHAGLPLDPRAMWP
TGMDKLGVPVKGKLKTDELTSQGRVLARLSDLGWGNALRAMFAAGSPDAPIDAAMAQAVV
AVLREWGQTGWEXGGRPAAVVSMPSRSKPLLMQSFAQAICEIGRLPYLGELFLEFGGPTG
ARGGNSAYRLAGVWERFAVGPDIAAGLAAHPAGPVLLLDDLVDSRWSLTVAGRALRQAGA
EQVLPLVLAQAG
NT seq
2199 nt
NT seq
+upstream
nt +downstream
nt
atgcaaccatcgccagatgcttccgcgactgttcacaccgcttattcacctgattcatgg
acgccgtccgctgcggggctccgtccnacaacacggggccaggcgcttgaagtgttgaga
gccctggtagggcgtgctgatgcggattttcacgacggccagtttgaggccattgaggct
ctggttgattccagccggcgcgctctggttgtccagcgcaccggctggggcaaatcggcg
gtgtactttgttgcctcgctcctgttgcggggccggggtgccggtcccacgctgatagtt
tcgccattgctggccctgatgcgcgatcaggttgctgctgccgagcgtgctggggtgcgg
gccatggccattaactccgccaatgccactgaatggggtgagatctctgctgcgttggca
gctgatgaagtcgatgtgctgttggtctctcccgaacggctgacgaacccttccttccgt
gaaaatcagctcccttccttgattcagcgcacgggccttctggtggttgatgaagcacat
tgcatttcagattgngggcacgacttccgccccgactaccgccgtatcgcggacctgatt
gctcagctgccttcctccgttcccgtccttgccactacggctacggccaactcccgtgtg
gttgctgacattgaggaacagctaggtgccggggtattcaccattcgaggtcctctggcc
cgtaaatcccttcggttgggagtgctccggttggctgattccagggacaggcttggctgg
ctcctcacccacttggccgaactgccaggtagcggaatcatctatacgctgacagtctca
gcggctgaggatacggcccggctgctctccggagcagggcatgtggtcaaggcctatacg
ggccgcaccgacaccatggagcgtgagtccctagaagaagcgctcaanaataaccaagtc
aaggccctagtcgccacaagtgcgttgggtatggggttcgataaaccggatctggggttt
gttgttcancttggggcaccgtcatcgccagtggcttattaccaacaggtgggccgtgcc
ggccgtggcagcgccaacgccgatgtactgcttttgccgggcagcgaggacgcagaaatc
tggcgctactttgccacagcgtcaatgcctgcccaggataaggccatggcggtattgacg
gccctgggcgaatcgcccaagcccatgtccnnacctgccttggaggcccgggtggactta
cggcgcacnccgcttgaacttctgcttaaggtcttggccgttgatggggccgtccggcgc
gtggcaggcggttgggaatccactggccaaccgtggacctatgacgaggagaggtaccgg
cggattacccaggcccgggtggatgaacaacagtcaatgattgagtacgagcgcatgtca
gggtgccgcatggaatatctcgctgctgcacttgatgatgacaccgcagctccctgcggc
cggtgcgataactgcacgggccgttggttcagtgccgaggtgacctccagtgcctctgaa
gccgcaggggaatccctacgccatgcaggactgccgcttgatccgcgcgccatgtggccc
acgggtatggacaagctgggcgtgccggtgaagggcaaactcaaaactgatgagctgacc
tcacaagggcgggtccttgccaggctcagtgatctgggatggggcaatgccctgcgggcc
atgtttgctgcaggatcacccgatgcccccatcgatgcggccatggctcaggcagtggtg
gctgtgctgcgtgaatggggtcagacggggtgggaanngggagggcggccagccgccgtc
gtctccatgccctcacgtagcaaacccttgctgatgcagtcctttgcccaagccatctgc
gagatcggccggctgccatatttgggtgaactgttcttggaatttggtgggccaactggt
gcgcgcggcggcaatagtgcataccgccttgccggtgtctgggaacgcttcgccgtgggt
cctgacattgcagctggccttgcagcccaccccgcnggtcccgtgctnttgctggatgat
ctggtggacagccgatggtccctcactgtggccggccgggcgctgcgtcaagccggagcg
gagcaagtcctgccgctcgttttagcccaggcaggctaa
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