Arcobacter porcinus: APORC_0997
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Entry
APORC_0997 CDS
T06395
Symbol
pnp
Name
(GenBank) polynucleotide phosphorylase
KO
K00962
polyribonucleotide nucleotidyltransferase [EC:
2.7.7.8
]
Organism
apoc
Arcobacter porcinus
Pathway
apoc03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
apoc00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
APORC_0997 (pnp)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
apoc03019
]
APORC_0997 (pnp)
03016 Transfer RNA biogenesis [BR:
apoc03016
]
APORC_0997 (pnp)
Enzymes [BR:
apoc01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.8 polyribonucleotide nucleotidyltransferase
APORC_0997 (pnp)
Messenger RNA biogenesis [BR:
apoc03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
APORC_0997 (pnp)
Transfer RNA biogenesis [BR:
apoc03016
]
Prokaryotic type
tRNA degradation factors
APORC_0997 (pnp)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
RNase_PH_C
S1
KH_1
PNPase
KH_2
MIC19_MIC25
Hjc
HATPase_c_5
Motif
Other DBs
NCBI-ProteinID:
QEP40599
UniProt:
A0A5C2HCN3
LinkDB
All DBs
Position
959278..961425
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AA seq
715 aa
AA seq
DB search
MAIICEIDLNNQKEIFEFNKVAKQANGAVLAKVGDCVVLATVACEFDNPVSEDFTPLTVQ
YIEKTYASAKLPGGFIKREGKPSDFETLTSRVIDRSLRPLFPKGFVYPTTITVMVLSADK
DVDLQTIALNTANAALYTSNLPIKKSVCGVRVGKIDENLVLNPSQEDLNNSTLDLYIAGS
KDELLMIEMKSSSSLKDKEHCANEMDEEDLVKAISFAQEALKKANIAYEENFEKASKEKA
NVEIVEFTIDEKIISYVRDNFSNNVKDAIKKLAKSERATELKELAKKISQNEYCISNEIE
NSTIYEAVNIVKRELVRAMIVDDKVRADGRGLKDVRPISIETNILPKAHSSCLFTRGETQ
ALVVGTIAGAKDGQMYEVLTDKATSMENFMVHYNFPGFSVGEAKPIFGVGRRELGHGNLA
KKALEATISKNYNETVRLVSEILESNGSSSMATVCGGSLALKAAKIPISNLVAGVAMGMV
VENDKYSILTDIMGLEDHDGDMDFKVAGTKNGITALQMDIKLGGIELSILTEALNQAKEG
RLHILNIMEEASKDIVSSKALPKCEEFEIDSSKMMVVIGKGGSTIKEIIEKYSVNIDLDR
DNGIVKLSGEDENKISDACVFIKDLVNNSNSSKPQVKNIDFEKLYSVDEKVNGKVERLVD
FGAFILLEKGGEGLLHISKISKDRIEKASDVLSVGQELEVKVLKVQKDRIELGLN
NT seq
2148 nt
NT seq
+upstream
nt +downstream
nt
atggcaataatatgcgaaatagatttaaataatcaaaaagagatttttgagtttaataag
gttgctaaacaagcaaatggtgcagtattagcaaaagttggagattgtgtagttttagca
actgttgcttgtgaatttgataatccagtaagtgaagatttcactcctttaactgtacaa
tatattgaaaaaacttatgcttctgcaaaactacctggtggttttataaaaagagaagga
aaacctagtgattttgaaactttaacttcaagagttattgatagaagcttaagacctcta
ttcccaaaaggatttgtatatccaacgacaataactgtaatggttttaagtgctgataag
gatgttgatttacaaactattgctttaaatactgcaaatgctgcactatatacttcaaat
ttaccaattaaaaagtcagtttgtggagtaagagtaggaaaaatagatgaaaatctagtt
ttaaatccaagtcaagaagatttaaataattcaacactagatttatatattgctggttct
aaagatgagcttttaatgattgagatgaaaagctcatcttcattaaaagataaagagcat
tgtgcaaatgagatggatgaagaagatttagtaaaagcaatctcttttgctcaagaagct
ctaaaaaaagcaaatattgcatatgaagagaactttgagaaagcatctaaagagaaagca
aatgttgagattgttgaatttacaatagatgaaaaaataatatcttatgtaagagataat
ttttcaaataatgtaaaagatgcaattaaaaaattagcaaaaagtgaaagagcaacagaa
ctaaaagagttagctaaaaaaatcagtcaaaatgagtattgtatttcaaatgaaattgaa
aactctacaatatatgaagctgtaaatattgtaaaaagagaacttgtaagagctatgatt
gttgatgataaagtaagagcagacggaagaggtttaaaagatgttagaccaattagtata
gaaacaaatattttaccaaaagctcattcatcttgcttatttacaagaggtgaaactcaa
gctttagttgtaggaacaatcgctggtgctaaagatggtcagatgtatgaagttttaaca
gataaagcaacttcaatggaaaactttatggtacattataactttccaggatttagtgtt
ggtgaagcaaaaccaatttttggtgtaggaagaagagagttaggtcatggaaatttagca
aaaaaagctttagaagcaacaatcagtaaaaactataatgaaacagtaagattagtttct
gaaatacttgagtcaaatggttcttcatctatggcaacagtttgtggtggttcattggct
ttaaaagctgcaaaaattccaatatcgaatcttgttgcaggagttgctatgggaatggtt
gttgaaaatgacaaatactctattttaacagatattatgggattagaagatcatgatggg
gatatggatttcaaagttgccggtacaaaaaatggaattacagctttacaaatggatatt
aaacttggtggaatagagttatcaattttaacagaagcattaaatcaagcaaaagagggt
agattacatattctaaatattatggaagaagctagtaaagatatagtttctagtaaagct
ttaccaaaatgtgaagagtttgaaattgattcttctaaaatgatggtagttattgggaaa
ggtggttctactattaaagagattattgaaaaatattcggtaaacattgacttagataga
gataatggaattgtaaaactaagtggagaagatgaaaataagatttctgacgcttgtgta
tttattaaagatctagttaataattctaactcttctaaaccacaagttaaaaatatagac
tttgaaaaactatattctgttgatgaaaaagtaaatggaaaagttgaaagacttgttgac
tttggtgcttttattctattagaaaagggtggagaagggcttcttcatatttctaaaatt
tcaaaagatagaatagaaaaagcaagtgatgtattaagtgtaggacaagaacttgaagta
aaagtactaaaagtacaaaaagaccgaatagaattgggattaaattaa
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