Arcobacter porcinus: APORC_1797
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Entry
APORC_1797 CDS
T06395
Symbol
rho
Name
(GenBank) transcription termination factor
KO
K03628
transcription termination factor Rho
Organism
apoc
Arcobacter porcinus
Pathway
apoc03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
apoc00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
APORC_1797 (rho)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
apoc03021
]
APORC_1797 (rho)
03019 Messenger RNA biogenesis [BR:
apoc03019
]
APORC_1797 (rho)
Transcription machinery [BR:
apoc03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
APORC_1797 (rho)
Messenger RNA biogenesis [BR:
apoc03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
APORC_1797 (rho)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ATP-synt_ab
Rho_RNA_bind
Rho_N
AAA_25
ATPase_2
AAA
S1CSD-TOTE-2
Spore_III_AA
AAA_22
OB_RNB
Motif
Other DBs
NCBI-ProteinID:
QEP41358
UniProt:
A0A1C0AYU1
LinkDB
All DBs
Position
complement(1733682..1735004)
Genome browser
AA seq
440 aa
AA seq
DB search
MEESKEEQKVRNSKKARTHVPVDGYKIEQLRELPLETLLDIANDLDVENPQELKRQDLMF
MILASQIDAGGFILFTGILEIKDGGFGFLRAIDGNFSDTSNDSYVSATQIRKFALRTGDI
VTGQVRPPNKDSEKYNALLKIEAINYLPVKDSKNRPLFDNLTPLYSTTKFKFEFDSQKLT
GRVLDLFAPMGKGQRSLIVAPPKTGKTELLKELAHAISRNHPEVTLMVLLIDERPEEVTD
MQRSVKGEVYSSTFDLPAQNHVRVAEIVIEKAKRLVEMKKDVVILLDSITRLARAYNTVT
PSSGKVLSGGVDANALHKPKRFFGAARNIEEGGSLTIISTALIDTGSKMDEVIFEEFKGT
GNSEVVLSRNAANKRVYPAIDIVKSGTRKEELLLSADTLQKTWILRNAMSEMDEVDVLKF
LYPKMQKTKNNDEFFASMNE
NT seq
1323 nt
NT seq
+upstream
nt +downstream
nt
atggaagaatctaaagaagaacaaaaagtaagaaacagtaaaaaagcaagaacacatgtt
cctgtagatggttataaaattgaacaattaagagagttgccattagagactctattagat
attgcaaatgatttagatgttgagaatccacaagaactaaaaagacaagatttaatgttt
atgattcttgcatctcaaattgatgctggtgggtttattctatttacaggaatcttagag
ataaaagatggtggatttggatttttacgagcaatagatggaaatttctctgatacatca
aatgactcttatgtaagtgcgacacaaattagaaaatttgcactaagaactggagatatt
gtaacaggacaagtaagaccaccaaataaagatagtgaaaaatacaatgcacttcttaaa
atagaagctataaattatctgcctgtaaaagattcaaaaaatagaccactttttgataac
ttaactcctttatattctactacaaaatttaaatttgaatttgattcacaaaaactaaca
ggaagagttcttgatctttttgcaccaatgggaaaaggacaaagaagtttaattgtagct
cctccaaaaactggtaagactgaacttttaaaagagttagctcatgcaatttctagaaat
catccagaagttactttaatggttttattaatcgatgaaagaccagaagaggtaacagat
atgcaaagaagtgtaaaaggtgaagtatatagttcaacttttgacttacctgcacaaaac
catgttagagttgctgaaattgtgattgaaaaagcaaaaagacttgttgagatgaaaaaa
gatgttgtaattttacttgattctattacaagattagcaagagcttataatacagttact
ccaagtagtggaaaagttctttcaggtggagttgatgcaaatgctttacataaaccaaaa
agattttttggtgctgcaagaaacatagaagagggtggaagcttaactattatttcaaca
gcattaattgatacaggttcaaaaatggatgaagtaatttttgaagagtttaaaggaact
ggaaactctgaagttgtattaagtagaaatgctgcaaataagagagtttatcctgctatt
gatattgtaaaatctggaacaagaaaagaagagttacttcttagtgctgatactttacaa
aaaacatggatattaagaaatgctatgagtgaaatggatgaagtagatgttcttaaattc
ttatacccaaaaatgcaaaaaacaaaaaacaatgatgagttttttgcatcaatgaacgaa
taa
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