Ancylobacter polymorphus: K9D25_01380
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Entry
K9D25_01380 CDS
T08152
Symbol
rpoN
Name
(GenBank) RNA polymerase factor sigma-54
KO
K03092
RNA polymerase sigma-54 factor
Organism
apol
Ancylobacter polymorphus
Pathway
apol02020
Two-component system
apol02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
apol00001
]
09130 Environmental Information Processing
09132 Signal transduction
02020 Two-component system
K9D25_01380 (rpoN)
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
K9D25_01380 (rpoN)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
apol03021
]
K9D25_01380 (rpoN)
Transcription machinery [BR:
apol03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
K9D25_01380 (rpoN)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma54_DBD
Sigma54_CBD
Sigma54_AID
HTH_IclR
HTH_3
HTH_AraC
Phage_CII
Arg_repressor
PP_kinase_C
Motif
Other DBs
NCBI-ProteinID:
UOK71412
UniProt:
A0A9E6ZWH2
LinkDB
All DBs
Position
complement(310138..311721)
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AA seq
527 aa
AA seq
DB search
MSLGPRLEFRQTQSLVMTPQLMQAIKLLQLSNLDLVAYVEAELERNPLLERQAEPEGERA
GEGEADAGAVRERTSDADLDPRADQVHEREERVSDWLEERLETSRSAIEDRLDTGMENVF
PDDNGREPAAPLPSGEGPTYSEWTGAGGGGADGEGYNLEAFVSAETSLADHLEAQLVLAV
SNPVERLIGHNLIDLIDEAGYLSADLASVAERLGAPLAAVEKVLAVIQAFDPPGIGARSL
AECLAIQLRERNRYDPCMAALLAHLELLARREFNTLKRVCGVDDEDLAEMVGEIRRLNPK
PGLAFGSGILQPVVPDVFVRGSADNWLVELNSETLPRVLVNQAYYSRVQKITRNEREKAF
LSDCMQTATWLTRSLDQRARTILKVATEIVRQQDAFLTLGVQHLRPLNLRMVADAIGMHE
STVSRVTSNKYMATPRGIFEMKYFFSSSISSSDGGEAHSAESVRFRIKQMIEAESPDDVL
SDDTLVQRLREAGIDIARRTVAKYREAMRIPSSVQRRREKQAAAAGG
NT seq
1584 nt
NT seq
+upstream
nt +downstream
nt
atgtcgctaggtccgcgactcgaattccgccagacccagtcgctggtaatgacgccgcag
ctcatgcaggcgatcaagctgctgcagctctccaatctcgatctcgtggcctatgtcgag
gcggagctggagcgcaacccgctgctggaacgccaggccgagcctgagggtgagcgcgcg
ggggagggcgaggcggacgccggggcggtgcgcgagcgcaccagcgacgccgatctcgat
ccccgggccgatcaggtgcatgagcgcgaggagcgcgtctccgactggctggaggagcgg
ctggagacgagccgcagtgccatcgaggatcggctcgataccggcatggagaacgtcttc
cccgacgataatggccgcgagccggcggcgccgctgccgagcggcgaaggcccgacctat
tcggaatggaccggcgcgggcggcggcggggcggatggtgagggctacaatctcgaagcc
ttcgtttcggccgagacctcgctcgccgaccatctcgaagcccagctggtgctggcggtc
agcaacccggtggagcgcctcatcggccacaacctcatcgatctcatcgacgaggccggt
tatctctccgccgacctcgccagcgtggccgagcggctcggcgcaccgctcgcggccgtg
gagaaggtgctggcggtgatccaggccttcgacccgccgggcatcggcgcgcgatcgctg
gccgaatgcctcgccatccagctgcgcgagcgtaaccgctacgatccctgcatggcggcg
ctgctcgcccatctcgaactgctggcccggcgcgaattcaacacgctgaagcgggtctgc
ggcgtcgatgacgaggacctcgccgaaatggtcggcgagattcgccggctgaaccccaag
cccggcctcgccttcggttccggcattctccagccggtggtgcccgacgtgttcgtgcgc
ggcagcgccgacaactggctggtggagctcaattcggagacgctgccgcgggtgctggtc
aaccaggcctattattcccgggtgcagaagatcacccgcaacgagcgcgaaaaggccttt
ctctccgattgcatgcagacggcgacctggctcacccgctcgctcgaccagcgcgcccgc
accatcctcaaggtggcgaccgagatcgtccggcagcaggatgcgttcctcaccctcggc
gtccagcatctgcgcccgctgaacctgcgcatggtggccgatgccatcggcatgcacgaa
tccacggtctcgcgcgtcacctctaacaaatacatggcgacgccgcgcggaatcttcgag
atgaagtatttcttctcgtcgtctatttcatcttccgacggtggcgaggcgcattccgcg
gaatcggtgcgcttccgcatcaagcagatgatcgaggcggagagcccggacgacgtgctt
tccgacgacacgctggtgcagcgcctgcgcgaggcggggatcgacatcgcccgccgtacg
gtggcaaaataccgtgaagccatgcgcattccctcgtccgtccagcgccggcgcgagaaa
caggcggcggcggccggaggctga
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