Ancylobacter polymorphus: K9D25_16060
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Entry
K9D25_16060 CDS
T08152
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
apol
Ancylobacter polymorphus
Pathway
apol03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
apol00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
K9D25_16060 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
apol03400
]
K9D25_16060 (mfd)
Enzymes [BR:
apol01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
K9D25_16060 (mfd)
DNA repair and recombination proteins [BR:
apol03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
K9D25_16060 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
Helicase_C
CarD_TRCF_RID
UvrB_inter
ResIII
Cas3-like_C_2
MFD_D3
SecA_DEAD
RecG_dom3_C
AAA_16
UB2H
Motif
Other DBs
NCBI-ProteinID:
UOK70232
UniProt:
A0A9E6ZUD3
LinkDB
All DBs
Position
complement(3390034..3393546)
Genome browser
AA seq
1170 aa
AA seq
DB search
MKTAFATLTSKLAPGRTVTLANVPGGMEGLVVADLARALAAQDKAPWPTLMVICRDSERM
AELERALGFFAPGVEVLPFPAWDCLPYDRASPNSAVIARRMTTLARLARVKGREAGTILL
TTVNAALQRVPSRALIATQSFSAAPGNALSLDEVVGWAEINGFQRTSTVRDTGEYAVRGG
IVDLFPPGLPAPVRLDFFGDTLESIRSFDPETQRTAMQMRALDLVPMSEVQLTSETMKRF
RMAYVAAFGAAQRGDMLYEAVSEGRRYPGMEHWLPLFHDGLDTLFDYAPDAPIVMEAQDD
EAAASRLDQIADYYDARRHGLEHGGGTPYKPLPPDALYLTAEEWKARREAAKNVALSAYA
LPESRDVIDLDGRPARSFAPERADPEASLFEVAAAYLRDLAKHKRTILAAWSDGSRDRLS
TVLADHGLKGTQTVGSRDAAEALPKGTIALAVLGIESGFETDGLAVIGEQDILGDRLVRP
KRKARRPQDVIAELGALTAGDLVVHVDHGIGRFIGLKTIEAMGAPHDCLEIHYAEGSKLF
LPVENLELLSRYGSEDTEAQLDRLGGGGWQARKARMKSRIREMAAELIKVAAQRQTQEAP
RLVPAAGLYDEFRARFPYEETEDQEAAIEAVFDDLGSGHPMDRLVCGDVGFGKTEVALRA
AFAVALNGKQVAVVVPTTLLARQHFKTFSERFKGLPVVVRQASRLVTGKELSDTKKGLAD
GTVDIVVGTHALLGKTISFRDLGLVIVDEEQHFGVGHKERLKQMRAEVHVLTLTATPIPR
TLQLAMTGVRELSIIASPPVDRLAVRSFITPFDPLIVREALLRERYRGGQSFYVCPRIED
LAEVKDFLDKSVPEVKVAVAHGQMAATQLEEIMSAFYDGQFDVLLSTTIVESGLDIPTAN
TLIIHRADMFGLAQLYQLRGRVGRSKTRAYAIFTLPAEKQVTAQADRRLKVLQSLDTLGA
GFQLASHDLDIRGAGNLLGDEQSGHIKEVGYELYQEMLEEAIANLKAGITAPAADKWSPT
ISIGTPVLIPEDYVTDLHVRLSLYRRLADMETDAEIESMGAEMVDRFGTLPEEVEQLLKL
VAIKALCRRANVEKVDAGPRGMVLTFRDGRFPNPAGFITYVGKPHVVAKMRPDGKVVFSE
DWPSANARLKGSAGILKELAKIAEQGAKAA
NT seq
3513 nt
NT seq
+upstream
nt +downstream
nt
atgaagaccgctttcgccaccctgacctcgaagctcgcgcccggccgcacggtcacgctc
gccaatgtgccgggcgggatggagggcctcgtcgtcgccgatctcgcccgcgcgctggcg
gcgcaggacaaggcgccctggccgacgctgatggtgatctgccgcgacagcgagcgcatg
gcggagctggagcgggcgctcggcttcttcgcgccgggggtggaggtgctgcccttcccg
gcctgggactgcctgccctatgaccgcgcctcgcccaacagcgccgtcatcgcccgccgc
atgaccacgctggcccggctcgcgcgtgtgaagggccgcgaggccggcaccatcctgctc
accacggtcaacgccgcgctgcagcgcgtgccgagccgcgcgctgatcgccacccagtcc
ttctccgccgcgccgggcaacgcgctctcgctcgacgaggtggtgggctgggcggagatc
aacggcttccagcgcacctccaccgtgcgcgataccggcgaatatgcggtgcgcggcggc
attgtcgacctgttcccgcccgggctgccggcgccggtgcggctcgatttcttcggcgac
acgctggaatcgatccgctccttcgaccccgagacccagcgcaccgccatgcagatgcgc
gccctcgatctggtgccgatgagcgaggtgcagctcaccagcgagacgatgaagcgcttc
cgcatggcctatgtcgccgccttcggcgcggcgcagcgcggcgacatgctctatgaggcg
gtgagcgaggggcggcgctatcccggcatggaacactggctgccgctgttccatgacggg
ctggacacgctgttcgactacgcccccgacgcccccatcgtcatggaggcgcaggacgac
gaggccgccgcctcccggctcgaccagatcgccgattattacgacgcccgccgccacggc
ctggagcatggcggcggcacgccctacaagccgctgccgcccgacgcgctctatctcacc
gccgaggagtggaaggcccggcgcgaggcggcgaagaacgtcgccctgtcggcctatgcg
ctgcccgaatcgagggacgtgatcgacctcgacggccgcccggcccgctccttcgcgccg
gaacgggcggaccccgaagcctcgctgttcgaggtggcggccgcctatctgcgcgacctc
gccaaacataagcgcaccatcctcgccgcctggtcggacggctcgcgcgaccggctgtcc
accgtgctcgccgatcacggcctcaagggcacgcagacggtcggctcgcgcgacgcggcg
gaggcgctgcccaagggcaccatcgcgctggccgtgctcggcatcgagtctggcttcgag
acggacggcctcgccgtcatcggcgagcaggacattctcggcgaccggctggtgcgcccg
aagcgcaaggcgcgccggccgcaggacgtgatcgcggagctgggcgcgctcaccgccggc
gatctcgtcgtgcatgtcgaccacggcatcggccgcttcatcgggctgaagaccatcgag
gcgatgggcgccccgcacgactgcctcgaaatccactatgcggaaggctccaagctgttc
ctgccggtggaaaacctcgaactcctgtcgcgctacggctcggaagacaccgaggcacag
ctcgaccggctgggcggcggcggctggcaggcgcgcaaggcgcggatgaagagccgtatc
cgcgagatggcggccgagctgatcaaggtggcggcgcagcgccagacgcaggaggcgccg
cgcctcgtgccggcggccgggctttatgacgagttccgcgcccgcttcccctatgaggag
accgaggaccaggaggccgctatcgaggcggtgttcgacgatctcggttccggccatccg
atggaccggctggtgtgcggcgatgtcggcttcggcaagacggaggtcgcgctgcgcgcc
gccttcgccgtggcgctgaacggcaagcaggtggcggtggtggtgccgaccacgctgctc
gcccgccagcatttcaagacgttttccgagcgcttcaaggggctgcccgtcgtggtgcgg
caggcctcgcggctggtgaccggcaaggaactttccgacaccaagaaggggctcgccgac
ggcacggtggacatcgtggtcggcacccatgcgctgctgggcaagacgatctccttccgc
gatctcggcctcgtcatcgtcgatgaggagcagcatttcggcgttggccacaaggagcgg
ctgaagcagatgcgcgccgaggtgcatgtgctgaccctcaccgcgacgcccattccgcgc
acgctgcagctcgccatgaccggggtgcgcgaactctccatcatcgcctcgccgccggtc
gaccggctggcggtccgcagcttcataaccccgttcgatcccttgatcgtacgcgaggcg
ctgctgcgcgagcgctatcgcggcggacagagcttctatgtctgcccgcgcatcgaggac
ctcgccgaggtgaaggacttcctcgacaagagcgtgccggaggtgaaggtcgcggtggcg
catggccagatggcggcgacgcagctcgaagaaatcatgtccgccttctatgacgggcag
ttcgacgtgctgctctccaccaccatcgtcgaatccggcctcgatatccccaccgccaac
acgctgatcatccaccgcgccgacatgttcggcctcgcccagctctaccagctgcgcggg
cgcgtcggtcgctccaagacgcgggcctatgccatcttcaccctgccggcggaaaagcag
gtgacggcgcaggcggatcggcggctcaaggtgttgcagtcgctcgacacgctgggggcg
ggcttccagctcgccagccacgacctcgacattcgcggcgccggcaatctgctcggcgac
gagcagtccggccatatcaaggaggtcggctacgagctgtatcaggagatgcttgaggag
gcgatcgccaacctcaaggccggcattaccgcgccggcggcggacaagtggtcgcccacc
atctccatcggtacgccggtgctgatccccgaggactatgtgaccgacctgcatgtccgc
ctcagcctctatcgccggctggccgacatggagaccgacgccgagatcgaatccatgggc
gcggaaatggtcgaccgcttcggcacgctgcccgaagaggtggaacagctgctcaagctg
gtggcgatcaaggcgctgtgccgccgcgccaatgtggagaaggtggatgccggcccgcgc
ggcatggtgctgaccttccgcgacgggcgcttccccaacccggccggcttcatcacctat
gtcggcaagccgcatgtggtggcgaagatgcgccccgacggcaaggtggtgttctccgag
gactggccgagcgccaatgcgcgactgaagggcagcgccggaattctgaaagagctggcg
aagatcgcggagcagggggcgaaggcggcctga
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