Ancylobacter polymorphus: K9D25_17345
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Entry
K9D25_17345 CDS
T08152
Symbol
rnr
Name
(GenBank) ribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
apol
Ancylobacter polymorphus
Pathway
apol03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
apol00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
K9D25_17345 (rnr)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
apol03019
]
K9D25_17345 (rnr)
03016 Transfer RNA biogenesis [BR:
apol03016
]
K9D25_17345 (rnr)
Enzymes [BR:
apol01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
K9D25_17345 (rnr)
Messenger RNA biogenesis [BR:
apol03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
K9D25_17345 (rnr)
Transfer RNA biogenesis [BR:
apol03016
]
Prokaryotic type
tRNA degradation factors
K9D25_17345 (rnr)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
CSD2
S1
RNase_II_C_S1
Tautomerase
Motif
Other DBs
NCBI-ProteinID:
UOK73218
UniProt:
A0A9E7ABG3
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All DBs
Position
3622314..3624554
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AA seq
746 aa
AA seq
DB search
MAFIASQGGDVGKREISRAFGLDGSDRIALKELLRELADEGLIGRKRRKLHLPGALPAVV
LSEVVERDEDGELIATPVDWDEEESGEAPRILVRLARRGRLAGPAPTVGDRVLLKTEEIP
EADGRIRHNGTVLKVIEKARALTLGIFRRDIQTGGGRLTPIDKRNMGRELAIPPDFTGEA
QEGDLVSVEIIRHHAYGLPTAKVKERLGSVATEKAISLIAIHAHGIPSVFRREALAEAEE
AQPASLRGREDWRDLPLVTIDPPDAKDHDDAVHATPDLDPDNEGGFILTVAIADVAAYVR
PNSALDREALARGNSVYFPDRVVPMLPERISNDLCSLRPLEDRPALAVRMVVGANGRKKR
HSFHRVMMRSAAKLAYAQAQAAIDGRVDDVTDPLLEGVLRPLWAAYGAVKKARDARAPLD
LDLPERKILLKPDGTVDKVVVPERLDAHRLIEEFMILANVAAAETLEEKRIPLIYRVHDQ
PSLEKMSALREFLQTLDIKLPKTESVRPAQFNDILARVEGTEMAPLVNQVILRSQAQAEY
ANENYGHFGLHLRRYAHFTSPIRRYADLIVHRALVRGLGFGADGLPETTTPEQLAEIAAR
ISASERRAMAAERETIDRLIAHHMAMQIGATFRARISGVTKAGLFVALDDTGADGFIPAV
TLGQDYYRYDEARHALVGERSGEMHRLGDRVEVKLVEAAPVAGALRFELLSEGNYVAPDR
RRPGGRGRQVRSTERPHGPKRFGKRR
NT seq
2241 nt
NT seq
+upstream
nt +downstream
nt
atcgccttcatcgcctcgcagggcggtgatgtcggcaagcgggagatttcgcgcgccttc
gggctcgacggcagcgaccgcatcgcgctgaaggagctgctgcgcgagctggcggatgag
ggcctgatcggccgcaagcgacgcaagctgcatctgcccggcgcgctgcccgccgtggtg
ctgtcggaagtggtggaacgcgacgaggatggcgaactcatcgccacgccggtggactgg
gacgaggaggagagcggggaagcgccgcgcattctcgtgcgtctcgcccggcgcggccgc
ctcgccggcccggcaccgacggtcggcgaccgggtgctgctgaagaccgaggaaatcccg
gaagccgacgggcgcatccgccataacggcaccgtgctcaaggtgatcgagaaggcccgc
gcgctcacactcggcattttccgccgcgacatacagaccggcggcggacggctcaccccc
atcgacaagcgcaatatggggcgcgaactcgccatcccgccggatttcaccggcgaggcg
caggagggcgacctggtctcggtggagatcatccgccatcacgcctacggcctgcccacc
gccaaggtgaaggagcgcctgggttcggtggcgacggagaaggcgatcagcctcatcgcc
atccacgcccatggcattcccagcgtcttccgccgcgaggcgctggcggaagcggaagag
gcccagcccgcctccctgcgcgggcgcgaggactggcgcgatctgccgctggtcaccatc
gacccgcccgacgccaaggaccatgacgacgcggtccacgcgacgccggacctcgacccc
gacaacgagggcggcttcatcctcaccgtcgccatcgccgatgtcgccgcctatgtccgc
ccgaactcggcgctggaccgcgaggcgctggcgcgcggcaattcggtgtatttccccgat
cgggtggtgccgatgctgcccgagcgcatctccaacgatctgtgctcgctccgcccgctg
gaagaccggccggcactcgccgtgcgcatggtggtgggcgccaatggccgcaagaaacgc
cacagcttccaccgcgtcatgatgcgctccgccgccaagctcgcctacgcgcaggcgcag
gcggcgatcgacgggcgggtggatgatgtcaccgaccccttgctggagggcgtcctgcgc
ccgctctgggccgcctatggcgcggtgaagaaggcgcgggacgcccgcgccccgctcgac
ctcgatctacccgagcgcaagatcctgctgaagcccgacggcacggtcgacaaggtggtg
gtgccggagcggctggacgcgcatcggctgatcgaggaattcatgatcctcgccaatgtc
gccgccgccgagacgctggaagagaagcgcattccgctcatctaccgcgtgcatgaccag
ccctcgctggagaagatgtcggcgctgcgcgaattcctgcagacgctcgacatcaagctg
ccgaagaccgagagcgtgcgccccgcccagttcaacgacattctcgcccgggtcgagggc
acggaaatggcgccgctggtcaatcaggtgatcctgcgcagccaggcgcaggcggaatac
gccaatgagaattacggccatttcggcctgcatctgcgccgctacgcgcatttcacctcg
cccatccgccgctatgccgatctgatcgtgcaccgggcgctggtgcgggggctgggtttc
ggcgccgacgggttgccggagacgacgacgcccgagcaactggcggagatcgccgcccgc
atttccgccagcgagcgccgggccatggcggccgagcgcgagaccatcgaccggctgatc
gcccaccacatggcgatgcagatcggcgccaccttccgcgcccgcatttccggcgtcacc
aaggccgggcttttcgtcgccctggacgacaccggggccgacggcttcattcccgccgtg
acgctggggcaggattattaccgctatgacgaggcgcgccacgcgctggtcggcgagcgc
agcggcgagatgcaccggctcggcgaccgcgtcgaagtgaagcttgtcgaagccgcgccc
gtggctggcgcgctgcgcttcgaactactatctgaggggaattacgtagcgcccgaccgg
cgccgccccggcggccgcgggcgtcaggtccgcagcacggagcgtccgcacggacccaag
cgcttcggcaagcggagatag
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