Acetobacter pomorum: CPF11_01900
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Entry
CPF11_01900 CDS
T05180
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
apom
Acetobacter pomorum
Pathway
apom03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
apom00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
CPF11_01900 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
apom03400
]
CPF11_01900 (mfd)
Enzymes [BR:
apom01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
CPF11_01900 (mfd)
DNA repair and recombination proteins [BR:
apom03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
CPF11_01900 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
UvrB_inter
Helicase_C
CarD_TRCF_RID
MFD_D3
ResIII
RecG_dom3_C
Cas3-like_C_2
AAA_16
UB2H
AAA_30
SecA_DEAD
Motif
Other DBs
NCBI-ProteinID:
ATI11318
UniProt:
A0AAN1PHZ4
LinkDB
All DBs
Position
complement(386628..390104)
Genome browser
AA seq
1158 aa
AA seq
DB search
MTAQTGAQKRIATVWGVPEGYDALLLGRRARDHKGPVLHIARNDAAMARLNDMLAFVAPD
VEVLRFPAWDCLPYDRVSPNPSIVAERVSTLTRLLEPAKGRPRLVLATVNAVVQRVAPRK
TFEGQSLSIRTGESLDQGFLIELLIANGYTRTDTVMEAGEFATRGGIFDLYPAGAGEPLR
LDLFGDEVENIRAFDPGSQRSTAKRDGLTLCPVSEFSLDKESISRFRTGWRDAFGPAATS
DPLYEHISDGRRHPGIEHWLPLFHDHLETLFDYLPDVAVSLEHQAEDVLKARLEMIEDHY
QARRQPVREGEIPYRPLPPHLLYLDEKGWDASLARVPVVAFSPYAQPEGAGGVDVGGRPG
KMFSKIVPGAQREQVFTLLGDQVKEWAQVKRRAFVAAWTKGSRERIATLLREHGVPTQTY
ETWEQAHKAKPGPVGLLTLGLERGFVADDLAFVSEQDLLGERIGRPPRRRRRADELIAEA
SELSAGDLVVHQDYGIGRYDGLETVSVGVAPHDCLRLLYDGGQKLYLPVENIELLSRFGS
DQAGVALDKLGGTAWQNRKSQMKKRIRDMAGELIRTAAMRALKEAPELVPPEGQWDEFCA
RFPFVETDDQARAIADVLEDMSSGRPMDRLVCGDVGFGKTEVALRAAFVAAMSGGQVAVV
VPTTLLARQHYRTFAARFEGFPIKVAQLSRMVTGKEATAVRKGIADGSVNIVIGTHALLA
KTVQFASLELLIIDEEQHFGVSHKEKLKALREDVHVLTLSATPLPRTLQLSLSGVREMSL
IATPPTDRLAVRTFIMPFDSVVIREAIQRERFRGGQIFCVAPRIEDLDRLAERLTAIVPD
ARLIQAHGRLSATELERVMTEFSDGKYDILLSTNIVESGLDMPAVNTLIIHRADMFGLGQ
LYQLRGRVGRGKQRGYAYLTWPQTHVLSASAEKRLEVMQTLDTLGAGFTLASHDLDLRGA
GNLLGDQQSGHVREVGIELYQQMLEDAVADLRSDKNRRAAEDRDWTPNIVMGLPVLIPDE
YVTDLPVRLGLYRRISALASDAELEAMEAELIDRFGSLPPEVKNLLDIVELKRLCRQAGV
ERVEAGPKGMVLQFRNNTFRNPAGLVQWMGKWKDGTVRLRPDHKMAVVRELTNVQRIDLA
RRVLKDLAGMCEKVMEMA
NT seq
3477 nt
NT seq
+upstream
nt +downstream
nt
atgacagcacaaacaggcgcacaaaagcggatagcaaccgtatggggcgtgccagaaggg
tatgatgcccttttgctgggccgccgtgcgcgggatcataaaggccccgtgctgcatatt
gcgcgaaatgatgccgctatggcccgcctgaatgatatgctggcctttgtagcgcctgat
gtggaagtgctgcgttttcccgcatgggattgcctgccgtatgacagggtttctcccaac
ccttccattgtggctgagcgtgtttccacccttacgcgcttgctggaacctgcaaaaggt
cgcccacggcttgtgctggctacggtgaacgccgtggtgcaacgtgttgccccacgtaaa
acgtttgaggggcaatccctttccatccgcacgggggaaagtctggatcagggctttctg
atcgagttgctgatcgccaatggttacacccgcacggataccgtgatggaagccggggag
tttgcaacccgtggcggtatttttgatttgtaccccgccggggcgggtgaacccctgcgg
cttgatctgtttggcgatgaagttgagaacatccgggcgtttgatcccggttcccagcgt
tctaccgctaagcgcgatgggctgacactttgtcctgtttccgaattctcattggataag
gaaagcatttcacgcttccgcactggctggcgtgatgcctttggccccgcagcaacgtct
gacccactttatgaacatatttcagacgggcgcaggcatccgggtatcgagcactggctg
cctttgttccatgaccatttagaaacactgtttgattatctgcccgatgtggctgtttca
ctcgaacatcaggcagaggatgtgcttaaagcccggttggaaatgatagaagatcactat
caggcccgccgccaacctgtgcgggaaggggaaataccttaccgtccgctgcctccgcat
ttgctctatctggatgaaaaagggtgggatgccagcttggctcgtgtgcctgtggtggca
tttagcccctatgcacaacccgagggcgccggaggtgtggatgtaggtggccgcccgggc
aagatgttctccaaaattgtacccggtgcccagcgtgagcaggtgtttacgctcttgggg
gatcaggtaaaggaatgggcgcaggttaagcgccgcgcttttgtagccgcatggaccaaa
ggctcgcgcgagcgcattgccacattactgcgagagcacggcgtacccacccaaacatat
gagacatgggagcaagcccacaaagccaaacccggcccggttggtttgctgacccttggt
ttggaacgcggctttgttgcggatgatctggcgtttgtttctgaacaggatctgttgggt
gaacgtattggtcgtccaccgcgccgtcgccgtcgtgctgatgaactgattgccgaagcc
agtgaactttcagccggtgatctggtggtgcatcaggattacgggataggccgttatgat
gggctggaaacagtaagtgtaggcgtagccccgcatgattgcttgcgcctgctgtatgat
ggcggacagaaactctacctgcctgtagagaacattgaactgcttagccgctttggatca
gaccaagctggtgttgcgctggataagctgggcggcacggcatggcagaaccgtaaatcg
caaatgaaaaagcgcatccgcgatatggcgggtgagcttatcagaaccgccgccatgcgg
gcgttgaaggaggcaccagaactggttccgccggaggggcagtgggatgagttctgtgcc
cgcttcccatttgtagaaacggatgatcaggcacgcgctattgctgatgtgctggaagat
atgtcctccggccgaccaatggatcggctggtgtgtggtgatgtcggctttggtaaaacc
gaggtagcattgcgcgcggcgtttgtggcggccatgtctggcgggcaggtggctgttgtg
gtgcccaccactttgttggcgcggcagcattatcgcacctttgccgcacggtttgagggc
tttcccatcaaggtggcgcaactttcccgcatggtaacgggtaaggaagcaacagcagtg
cgtaagggcattgcagatggaagcgtgaacattgttattggtacgcatgcactgctggcc
aaaacggttcagtttgcctcgctcgaactgctgattattgatgaagaacagcactttggc
gtgtctcataaggaaaagctgaaagccctgcgcgaagatgtgcatgtgcttacactttcc
gccacaccattgccgcgtacgctccaactctcgctttccggcgtgagggaaatgagcctg
attgccaccccaccaacagacaggctggcggtgcgcactttcatcatgccgtttgatagc
gtggtgataagggaggccatccagcgcgaacgcttccgtggtgggcagattttctgcgtg
gccccgcgtattgaggatctggacaggctggccgaacggcttacggccattgtgcccgat
gccaggctgatacaggcacatggccgcctttccgctaccgagctggaacgggtgatgacc
gagttttcagacggcaaatacgatattctgctctccaccaatattgtggaaagcggactg
gatatgcccgcagtgaatacgctgattatccatagggcggatatgtttggccttgggcag
ctttatcagctgcgcgggcgtgtggggcgtggcaagcaacgaggttatgcttaccttaca
tggcctcaaacacatgtgctttcagcttctgcggaaaagcggctggaagtaatgcaaacg
ctggatacgctgggtgctggctttacgctggcctcgcacgatctggatttgcgtggcgcg
ggtaatctactgggcgatcagcaatccggccatgtgcgtgaagtggggatcgaactgtac
cagcagatgctggaagatgccgtggccgacctgcgctcagataaaaatcgtcgtgccgca
gaagatcgggattggacgcccaacattgtcatgggtctgcccgtattgatcccggatgaa
tatgtaaccgatctgcctgtccggcttgggctctaccgtcgtatcagcgcgctggcatcc
gatgcagaactggaagccatggaagccgagctgatagatcgctttggttctctgccgccg
gaggtaaaaaaccttctggatattgtagagcttaagcgcctgtgccgtcaggccggggta
gagcgtgtagaggctggccctaaaggcatggtgctgcaattccgtaacaacaccttccgc
aacccggcagggttggtgcagtggatggggaaatggaaggatggcacagtccgcctacgc
ccagaccataaaatggcggttgtgcgcgaactgacgaatgtgcagcgcatagatctggcc
cggcgtgttttgaaagacctggctggtatgtgcgaaaaagtaatggaaatggcctaa
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