Acetobacter pomorum: CPF11_04260
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Entry
CPF11_04260 CDS
T05180
Name
(GenBank) ATP-dependent helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
apom
Acetobacter pomorum
Pathway
apom03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
apom00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
CPF11_04260
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
apom03019
]
CPF11_04260
Enzymes [BR:
apom01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
CPF11_04260
Messenger RNA biogenesis [BR:
apom03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
CPF11_04260
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Utp25_C
AAA_22
AAA_11
Flavi_DEAD
CMS1
Motif
Other DBs
NCBI-ProteinID:
ATI11745
UniProt:
A0AAN1U9L3
LinkDB
All DBs
Position
complement(889646..890968)
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AA seq
440 aa
AA seq
DB search
MTKFSDLALAPPLLKALAEQGYDTPTPIQERSIPYLLQGRDLLGLAQTGTGKTASFALPI
LEHLIKNPRANTPKQPRVLVLAPTRELVAQISDSFKAYARHMKFTQAVVFGGVGQGRQVE
AMRRGVDVLVAAPGRLLDLMGQGFIDLSGLEILVLDEADRMLDMGFVRDIRRIMTFVPEQ
RQTLLFSATMPRSIEDLAASLLNDPARVEVAPPSSTVDRIQQAVMFVNGAGDKRDALLNM
VESPKVSRAVVFTLMKHEANKVAEFLNKNNVVAEAIHGNKSQGARERAMKGFRSGSVKVL
VATDIAARGIDVDDVSHVFNYDLPNVPESYVHRIGRTARAGRDGWAVSFCDAEQRAWLRD
IERTIGKTVPVVRDHPWHSDEAEASTMRPPVLGGGGRGRGGPRGGGAPRGGAPGGGRGGP
RRSGGGARNGGRSGAPAGRM
NT seq
1323 nt
NT seq
+upstream
nt +downstream
nt
atgactaaattttccgatcttgctcttgctccaccactgctgaaggcattggcagagcag
ggttatgatacacccactcctattcaggaacgttccatcccctatctgttgcaggggcgt
gatctgctgggcctggcccagacaggcacaggcaaaaccgcatcttttgcgctgcctatt
ttggaacatctgattaaaaacccacgtgcaaacacgcccaaacagccgcgcgttctggtg
ctggcgcctacgcgtgagcttgtggcccagattagcgatagctttaaagcttacgcacgc
catatgaagtttacgcaggccgttgtgtttggtggcgtggggcagggccgacaggttgaa
gccatgcgtcgtggcgtagatgtgctggtggctgcgccgggccgtttgcttgatctgatg
ggccaaggctttattgatctgtctggtctggaaattctggtgctggatgaagcagaccgc
atgctggatatggggtttgtgcgcgatatccgccgtatcatgacctttgtgccagaacag
cgccagacgcttctgttctccgccaccatgccgcgcagcattgaagatctggcggcatct
ttgctgaatgatccggcacgcgttgaagtggcgccgccttccagcacggtggatcgtatt
cagcaggccgtcatgtttgtaaatggcgcgggtgataagcgcgatgcgctgctgaacatg
gtggaatctcccaaggtttctcgcgctgtggtgttcacgctcatgaagcatgaagccaac
aaggttgcggaatttttgaacaagaacaacgtggtggcagaagccattcatggcaacaag
tctcagggtgcgcgtgagcgggccatgaagggcttccgttctggttctgttaaagtgctg
gtggcaacggatattgccgcccgcggtattgatgtggacgatgtcagccacgtgtttaat
tacgatctgccaaacgtgccggaaagctacgtgcaccgcattggtcgtacagcacgtgcc
gggcgtgatggctgggctgtttccttctgtgatgcagaacagcgggcttggctgcgcgat
attgaacgcaccattggcaaaactgtgccggtggttcgggatcatccttggcactctgat
gaagcagaagcttccaccatgcgtccgcctgttctgggtggcggtggccgaggacgtggt
ggcccgcgcggcggcggtgcgcctcgtgggggggctccgggtggtggccgtggtggcccg
cgccgttccggtggtggtgctcgtaatggtggccgttccggtgcgcctgctggccgcatg
taa
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