Algimonas porphyrae: AB6B39_04780
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Entry
AB6B39_04780 CDS
T10736
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
apop Algimonas porphyrae
Pathway
apop03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
apop00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
AB6B39_04780
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
apop03019
]
AB6B39_04780
Enzymes [BR:
apop01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
AB6B39_04780
Messenger RNA biogenesis [BR:
apop03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
AB6B39_04780
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
ERCC3_RAD25_C
Motif
Other DBs
NCBI-ProteinID:
XER24392
LinkDB
All DBs
Position
complement(956495..958150)
Genome browser
AA seq
551 aa
AA seq
DB search
MTSFTDLDLAEPIARALATIGYTTPSPIQAQAIPHLLEGQDLLGIAQTGTGKTAAFALPT
LHHIFTHDMDPPKRGARVLVLAPTRELVGQIEKSFRSYGRFMMDLEIAKVTGGVSIARQI
KRLVHGNDILVATPGRLIDLLDRGDVRLSGVEVLILDEADQMMDMGFIHALRKIIPLLPK
KRQTLFFSATLPPKIRKLADSFLSDPVKVTVSPPNTTAERVEQSLIYAEGPEKPMLLADS
LLRDEVTRSLVFTRTKHGADRVVKRLAQIGIPALAIHGNRSQGQRTRALDAFKSGEVDVL
VATDVAARGIDIPEISHVFNYEIPNVPEQYVHRIGRTARAQASGRAIAFVAKDERAYLKD
IQKLLGETIPVETMPDDMADRIKVIEARPAIARVNLSPDQPARKGRGKSRKKTGKPSGKS
TRRDQGQKSAQDRSTFKNASDTPSGERKPAHSKPKRGSRSDSPRTDGQGYRTRQTETETG
KREPSTKTDRPQIDPARRRAAPSRKTGVPPQSGSSAPNAKSAQSFKRKPRRKPAPFRNRG
GGQAPPKRRGH
NT seq
1656 nt
NT seq
+upstream
nt +downstream
nt
atgacatcatttacagacctcgacctggccgagccgattgcgcgcgcgctggcaacgatc
ggctacaccacaccctcccccattcaggcccaggctatcccgcatctgctggaagggcag
gacctgttgggcatcgcccagacagggaccggcaagacggcagccttcgccctgccgacc
ctccaccatatcttcacccacgatatggacccgccgaaacgcggggcgcgcgtgcttgtg
ctcgcccccacgcgcgaacttgtcggacagatcgaaaagagctttcgcagctatggccgc
ttcatgatggatctcgagatcgccaaagtcacaggcggtgtctccattgcaaggcagatc
aaacgccttgtgcatggcaatgacattctggttgcgactcctggccgcctgatcgatctg
ctcgaccggggcgatgtgcgcctatccggcgtcgaagtcctcattctcgatgaagcggat
cagatgatggatatgggcttcatccatgcgctgcggaagatcatcccgctcttgccgaaa
aagcgccagacgcttttcttctcggcgacgcttcctccgaaaatccgcaaacttgccgac
agctttctcagcgatccggtcaaggtcacggtttctccgcccaacacgacggctgaacgg
gtcgaacaatcactgatctatgcggaagggccggaaaaaccaatgttgctggccgatagc
ctgctacgcgacgaagtcactcgctcgctggttttcacgcgcacgaagcacggcgcagac
cgggtcgtgaaacgattggcgcaaatcggcattcctgctctcgccattcatggcaatcgc
agccagggccaacgcacgcgcgcgctggatgccttcaagtccggcgaagtcgatgttctg
gtcgcaacagatgtcgcggcccgcgggatcgatattccggaaatcagccacgttttcaat
tacgagatcccgaatgtgccggagcaatatgtccatcgtatcgggcggacggcccgcgca
caggcctcgggccgtgccatcgccttcgtcgccaaggatgagcgcgcctatctgaaggat
attcagaaactgctgggcgaaactattcctgtcgagacgatgcccgacgacatggccgac
cggatcaaggtgattgaagcgcgccctgccatcgcacgcgtcaatctgagccccgatcag
cccgcgcgcaaaggccggggaaagtcacgcaagaaaaccggcaagccgtcaggtaaatcc
acacgcagggatcagggccagaaatcggctcaagaccgcagcacctttaagaacgcatcc
gacacaccgtctggagaacgcaagccagcccacagcaagccaaagcgtgggtcacggtcg
gattcgcctcggacagatggtcagggttacaggacccggcagactgagacggaaaccggc
aagcgcgaaccctcgaccaaaacagatcgaccacagatcgatccggcacgtcgccgcgct
gcgccgtcccgcaagacaggcgtacccccacagtcgggatcatcggcacccaatgccaaa
tcggcgcaatcgttcaaacgcaaacccagacgtaagcccgcaccgttccgcaatcggggt
ggcggacaggctccgcccaaacgacgcggacactga
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