Algimonas porphyrae: AB6B39_05935
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Entry
AB6B39_05935 CDS
T10736
Name
(GenBank) integration host factor subunit beta
KO
K05788
integration host factor subunit beta
Organism
apop Algimonas porphyrae
Brite
KEGG Orthology (KO) [BR:
apop00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
apop03032
]
AB6B39_05935
03036 Chromosome and associated proteins [BR:
apop03036
]
AB6B39_05935
03400 DNA repair and recombination proteins [BR:
apop03400
]
AB6B39_05935
DNA replication proteins [BR:
apop03032
]
Prokaryotic type
DNA Replication Initiation Factors
Initiation factors (bacterial)
AB6B39_05935
Chromosome and associated proteins [BR:
apop03036
]
Prokaryotic type
Nucleoid associated proteins
IHF (integration host factor)
AB6B39_05935
DNA repair and recombination proteins [BR:
apop03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Facilitator
AB6B39_05935
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Bac_DNA_binding
HU-HIG
HU-CCDC81_euk_1
HU-DNA_bdg
TetR_C_30
HU-CCDC81_bac_2
Motif
Other DBs
NCBI-ProteinID:
XER24610
LinkDB
All DBs
Position
1224592..1224882
Genome browser
AA seq
96 aa
AA seq
DB search
MLRSELIDKLHEENPHLTRRDMERVVAVVLETVTQTLERGARVELRGFGAFSVRHRKARP
GRNPRTGEPVAVPEKHVPFFRTGKDLREKINSSRDA
NT seq
291 nt
NT seq
+upstream
nt +downstream
nt
atgctgcgctccgagttgatcgataagcttcacgaagaaaacccgcacctgactcgccgg
gacatggaacgcgtggtggccgtcgttctcgaaacggtcacgcagacgctggaacgcggt
gcccgtgtcgagctgcgcggttttggcgccttttctgttcgccatcgcaaagcacgtccg
ggccgcaatccgcgtacgggcgaaccggtcgccgtacccgaaaaacatgtcccgttcttc
cgcacaggcaaggatctgcgcgaaaagatcaactcatcccgcgacgcgtaa
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