Actinobacillus porcitonsillarum: DDU33_05990
Help
Entry
DDU33_05990 CDS
T05443
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
apor
Actinobacillus porcitonsillarum
Pathway
apor03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
apor00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
DDU33_05990
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
apor03400
]
DDU33_05990
Enzymes [BR:
apor01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
DDU33_05990
DNA repair and recombination proteins [BR:
apor03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
DDU33_05990
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
UvrB_inter
MFD_D3
Helicase_C
CarD_TRCF_RID
ResIII
UB2H
ERCC3_RAD25_C
RecG_dom3_C
AAA_30
Motif
Other DBs
NCBI-ProteinID:
AWI51056
UniProt:
A0A2U8FKP5
LinkDB
All DBs
Position
1224204..1227659
Genome browser
AA seq
1151 aa
AA seq
DB search
MSFEFQFRLPKADSTHQDHQTLGNLIGHSDILAIVQASQQFQGLTVVVTPDTRTALRLEK
SLPSFTKLPVQLFPDWETLPYDNFSPHQDIISARLSALFQLQQGQKQIFLLPINTLLQKV
CPPSYLANNVLLIKKGDRFSIEKLRLQLENAGYRAVEQVLEYGEYAVRGALLDLYPMGAN
SPYRLDFFDDEIDTIRTFDVDNQRTIEQIDEINLLPAHEFPTDSNGIEYFRGKFREQFGE
IRREPEHIYQQVSKGILNAGIEYWQPLFFEQMASLFDYLPEQTLFITFADIQQKAEQFQQ
DTARRYESRRVDPMRPLLPPEQLWFNIDQINQQLKGYPRLTLTNEKVRSSAAKQNANLEP
LPDIAVQSNQKEPFASFLQFQQKFKGQILFSVETEGRRETLLELLAPLNIKPKQVKQLSE
SNSSISLLISPLDQGFIIETSGQKLAIICETDLLGEKVQQSRRQEKSRKTVNPDTLIRNL
AELKIGQAVVHLENGVGRYGGLTTLDAGGIKAEYLVLHYANDAKLYVPVASLHLISRYIG
GTDENAPLHKLGSEAWAKTRQKAAEKIRDVAAELLDVYAKRESQKGFAFEYDRDAFVQFS
NTFPFEETEDQKTAINAVISDMCLPKAMDRLVCGDVGFGKTEVAMRATFLAVMNHKQVAI
LAPTTLLAQQHFENFKDRFANYPINVEVLSRFKTAKEQKEILAKVADGKVDILVGTHKLL
QEDVQFKDLGLLVIDEEHRFGVRQKERIKQLRANIDILTLTATPIPRTLNMALNGMRDLS
IIASPPARRLSIKTFVRQSDDTVIKEAILREILRGGQVYYLHNDVATIENTAQQLAELVP
EARIVIGHGQMRERELERVMSDFYHQRFNLLVCSTIIETGIDVPTANTIIIERADKFGLA
QLHQLRGRVGRSHHQAYAYMLTPPPKMLTKDAQQRLEAMSSIDNLGAGFVLATHDLEIRG
AGELLGSEQSGQIESLGFSLYMELLENAVKALQEGREPTLDEITQQQVDIELRVPALLPD
DYLPDVNMRLSFYKRIASAESDEALKDLKIELIDRFGLLPEATKNLFQITQLRHLAKGLQ
LKKVDAGINGGYLEFKPTATPDPMKFLKLIQADKNVYKFDGPLKFRFTKPMERAEDRLAF
VAELIEGLAKS
NT seq
3456 nt
NT seq
+upstream
nt +downstream
nt
atgtcatttgaatttcaatttcgtctgccgaaagcggacagcacacatcaagatcatcaa
actttaggtaacttaatcgggcattctgatatccttgcgattgtgcaggcaagccagcaa
tttcaaggcttgactgtcgttgttacgcctgatacccgtacggcgttgcggttggaaaaa
agtttgccgagctttactaaactgcctgtacagctttttcctgactgggaaaccttgcct
tacgacaacttttcgccccatcaagatattatttccgcccgtttatctgcgttatttcag
ttgcaacaaggacagaagcagattttcctgttgccaatcaacaccttattacaaaaagtc
tgtccgccgagttatttggcaaacaatgtattgttgattaaaaaaggcgaccgtttttcg
attgagaaattacgcttacagctggaaaatgctggttatcgagcggtggaacaagtgctg
gaatatggcgaatatgcggtgcgaggggcattgctcgacctttatccgatgggagcaaat
tccccttatcgtttggacttttttgatgatgaaatcgacacgatccgcacctttgatgtg
gataatcaacgtaccattgagcagattgatgaaatcaatttattgccagcccacgagttc
ccgacagatagcaacgggatcgagtattttcgtggtaagttccgtgaacaatttggtgaa
attcgccgtgaacctgaacatatttaccaacaggtgagcaaaggcattttgaatgcaggg
attgaatactggcaaccgctcttttttgaacaaatggcgagcttgtttgattatctgcct
gaacaaacgttgtttattacctttgccgatattcagcaaaaagccgagcaatttcaacaa
gataccgcaagacgttatgaaagtcgccgtgtcgatccgatgcgaccgctacttccacct
gaacagctttggttcaatatcgatcagattaaccaacagctaaaaggctatccacgttta
actttaactaacgagaaagtccgcagttcggcggcgaagcagaacgccaaccttgagccg
ttgcctgacattgcggtgcaatccaaccaaaaagaaccttttgcctcttttttacagttt
caacagaaatttaaggggcaaattctcttttcggtggaaacggaaggcagacgggaaacc
ttgctggagctactggcaccgctaaatatcaagccaaagcaagtgaagcaactgtctgag
agcaattcgtcaatttctttgctaatttcaccgcttgaccaagggtttattattgaaaca
agcggtcaaaaactggcgataatttgcgaaacggatctgttaggcgagaaagtacagcaa
agtcgccgacaagagaaaagccgtaaaactgttaatcccgataccttgatccgcaacctt
gccgagctgaaaatcgggcaagcggtggtgcatttggaaaatggcgtggggcgttatggc
ggtttaaccacccttgatgcaggcggtattaaggcggaataccttgtgttgcattatgcc
aacgatgccaaactttatgtgccagtggcttcgctccatttaattagccgttatatcggc
ggaacggacgaaaatgctccgttacataaactgggatcggaagcttgggcgaaaactcgc
caaaaagcggcggagaaaattcgtgatgtagcggcggagttgcttgatgtctatgcgaaa
cgtgaatcgcaaaaaggctttgcgttcgagtatgatcgagatgcgttcgtgcaatttagc
aacactttcccgtttgaagaaaccgaagatcagaaaacggcgatcaatgcggtgattagc
gatatgtgcttgccgaaagcgatggatcgccttgtgtgtggcgatgtcggctttggtaaa
accgaagtggcaatgcgagcgaccttcttggcggtaatgaaccataaacaagtggcgatc
cttgctccgacaaccttgttggcacagcaacattttgagaattttaaagatcgttttgct
aattatccgatcaatgtggaagtgctttcccgtttcaaaaccgccaaagagcagaaagag
attttggcaaaagtggcggacggcaaggtcgatattttggtcggcacgcataaattattg
caagaagatgttcagttcaaggatctcggcttgctggtgattgacgaagaacaccgcttc
ggcgtgcgtcaaaaagagcgaattaagcaactgcgagccaacattgatattctcacgctc
acggcaacaccaattccaagaacgctcaatatggcgttgaacggaatgcgagatctgtcg
attatcgccagtccgccggctcgtcgtttgtcgatcaaaacctttgtgcgacaaagcgat
gatacggtaatcaaagaagcgattttgcgtgaaattctgcgtggcggacaagtgtattat
ctgcataatgatgtggcgaccattgaaaataccgcccaacagcttgccgaactggtgccg
gaagctcgtattgtgatcgggcacgggcagatgcgagagcgtgagttggaacgggttatg
tccgatttctaccaccagcgttttaatctgctggtttgctcaaccattattgaaacaggg
attgacgtgccgactgccaataccattattattgaacgagcggataaattcggcttggca
cagctacaccaactgcgtgggcgtgtcggacgttcgcaccaccaagcctatgcctatatg
ctaaccccaccgccaaaaatgctgaccaaagatgcacagcaacggcttgaagcgatgagt
agcattgataaccttggggctggctttgtgctggcgacccacgatcttgaaattcgtgga
gcgggtgaactgctggggagcgaacagagcggacagattgagagcttaggtttctcactc
tatatggaactgcttgaaaatgcggtcaaagccttgcaagaagggcgtgagcctacttta
gacgaaattacccaacagcaagtggatattgaattacgcgtgcctgcgttactgcctgat
gattatctgcctgatgttaatatgcgtttgtcgttctataaacggattgccagtgcagag
agtgatgaagccttaaaagatctgaaaatcgagctgattgaccgcttcggcttactgccg
gaagccacgaaaaacctgttccaaattacccaattacgccatttggcaaaaggattacag
ttgaaaaaagtcgatgcagggatcaacggcggttatcttgagttcaaaccaaccgcaacg
cctgatccgatgaagttcttaaaactaatccaagcggataaaaatgtctataaatttgat
ggtccgttgaagttccgctttaccaagccaatggaacgggcggaagatcgtttggcattt
gtggcggagttgattgaaggattggctaagtcttaa
DBGET
integrated database retrieval system
