Actinobacillus porcitonsillarum: DDU33_07405
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Entry
DDU33_07405 CDS
T05443
Name
(GenBank) ATP-dependent RNA helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
apor
Actinobacillus porcitonsillarum
Pathway
apor03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
apor00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
DDU33_07405
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
apor03019
]
DDU33_07405
03009 Ribosome biogenesis [BR:
apor03009
]
DDU33_07405
Enzymes [BR:
apor01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
DDU33_07405
Messenger RNA biogenesis [BR:
apor03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
DDU33_07405
Ribosome biogenesis [BR:
apor03009
]
Prokaryotic type
rRNA helicases
DDU33_07405
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
CMS1
DRTGG
Cas3-like_C_2
Motif
Other DBs
NCBI-ProteinID:
AWI51322
UniProt:
A0A2U8FK34
LinkDB
All DBs
Position
complement(1540041..1541855)
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AA seq
604 aa
AA seq
DB search
MTETNLTFADLGLPQSILDAVNEMGFVTPSPIQQACIPHLLNGRDVLGMAQTGSGKTAAF
SLPILAQIDPEQRYPQMLVMAPTRELAIQVADACEQFTKNMRGIRTVTIYGGQRYDIQIR
ALKNGAQVVVGTPGRILDHIRRGTLDLSALKAIVLDEADEMLRMGFIEDVETVMAELPEN
HQTALFSATMPEPIRRITKRFMKDPQEVKIQATQRSAPDIAQSYWLVNGFRKNDALLRFL
EVEDFDAAIIFTRTKTGTIDIAELCERNGYRAAALNGDMTQQSREQALDKLKSGRLDIIV
ATDVAARGIDIDRISLVVNYDIPLDAESYVHRIGRTGRAGRSGRALLFVEPRERRLLRNI
EHLIKKPIDEVAIPNHEILMEKRRAKFKARIEKQLEHHDLEKYRELLEDLFTADQDHEEL
AAAMMMLLQEKQKLILPPDPVIKAARGERGKGRENPRSAERRGNGREHRDNNGVAMDLYR
IELGREDGVEVRHIVGAIANEGDINSRYIGHIKLHDKYSTIELPQGMPKHLVQHFAQKAR
VLSKPMQMSFLGPAGGATNANPYEDKGGRGKGRGGKDGRRDERGFKDRKEGGFKEKRFNE
RGRR
NT seq
1815 nt
NT seq
+upstream
nt +downstream
nt
atgactgaaacaaatttaacttttgccgacttaggcttaccacaatctatccttgacgct
gtaaatgaaatgggatttgttaccccttcgcctatccagcaggcttgtattccacacctt
ttaaatggtcgtgatgtattaggaatggcacaaacaggaagtggtaaaacggcggcattc
tctctgcctattcttgcgcaaattgatcctgaacaacgctaccctcaaatgttggttatg
gcaccaactcgtgaattagcgattcaagtcgcagatgcatgtgaacaatttaccaaaaat
atgcgtggtattcgtaccgttaccatttacggtggtcagcgttacgacattcaaatccgt
gcattaaaaaatggcgcacaagttgtggtgggaacaccggggcgtattctcgaccatatt
cgccgtggtacacttgatctatcagcacttaaagccatcgtacttgatgaagctgatgaa
atgctacgtatgggatttattgaagacgtagaaacggtaatggctgaattacctgaaaat
caccaaactgcgctcttctctgccacaatgccagagcctattcgtcgtatcacgaagcgt
tttatgaaagatccgcaagaggtaaaaattcaagctacccaacgttctgcaccagatatt
gcgcaaagttactggttagtcaatggcttccgtaaaaatgatgcgcttctacgtttctta
gaagtagaagattttgacgcggcaattatctttacccgcacaaaaaccggcaccattgat
attgctgagctttgtgaacgtaacggctaccgagcggcagcgctcaatggcgatatgaca
caacaatctcgtgaacaagcgttagataaactgaaatcaggtcgtctagatattattgtt
gcaactgatgtggctgcgcgtggtattgatattgatcgtatcagccttgttgtaaactat
gatattccattagatgcggaatcttacgttcaccgtatcggtcgtaccggtcgtgccgga
cgttctggtcgtgcattattgtttgttgaaccacgtgaacgccgcttactgcgtaacatt
gaacatctcatcaaaaaacctattgatgaagtggcaattccaaatcacgaaatcttaatg
gaaaaacgccgagcgaaattcaaagctcgtatcgaaaaacaacttgagcatcatgattta
gaaaaatatcgtgaactattagaagatttatttaccgctgatcaagatcacgaagaactt
gcagctgcaatgatgatgctacttcaagaaaaacaaaaacttattcttccgccagatccg
gttatcaaagcagcacgtggtgaacgaggtaaaggccgtgaaaaccctcgctctgcggaa
cgacgtggcaatggtcgtgaacatcgtgataacaacggtgtcgcaatggatctttatcgt
attgaactcggtcgtgaagatggtgttgaagttcgtcatattgtgggcgcaattgcgaat
gagggcgacattaacagccgttatatcggacatatcaaattgcacgataaatattcaacc
attgagctacctcaaggtatgccaaaacacttggtgcaacactttgcacaaaaagcccga
gtattaagcaaaccaatgcagatgtctttcttaggtcctgccggtggtgcaacaaatgcg
aatccttacgaagataaaggcggacgtggcaaaggtcgtggcggtaaagatggtcgccgt
gatgaacgaggctttaaagatcgcaaagaaggcggatttaaagaaaaacgttttaacgag
cgtggtcgccgataa
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