Acinetobacter portensis: MZO21_07125
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Entry
MZO21_07125 CDS
T08876
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
apot
Acinetobacter portensis
Pathway
apot03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
apot00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
MZO21_07125 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
apot03400
]
MZO21_07125 (mfd)
Enzymes [BR:
apot01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
MZO21_07125 (mfd)
DNA repair and recombination proteins [BR:
apot03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
MZO21_07125 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
UvrB_inter
Helicase_C
CarD_TRCF_RID
ResIII
MFD_D3
SNF2-rel_dom
ERCC3_RAD25_C
Glyco_tran_WecG
RecG_dom3_C
Motif
Other DBs
NCBI-ProteinID:
UPO22302
LinkDB
All DBs
Position
complement(1428295..1431759)
Genome browser
AA seq
1154 aa
AA seq
DB search
MFQQEIAQLNLQRLKIGEKRWIGNLQGSAAALLFKEISKQNKQLFILVARNNQHLGQLES
ELEFYGIKPTIFPDWEILPYDRLSPHQDIVSERLSILSNMPTQGILLISATTLAQRVAPT
TWVLGEHFDIKIGQKFDLEKQKIRLIQAGYHLVDTVYDHGEFAVRGSIMDIYASGQNAPI
RIDLFDDEIESLKFFDPETQRTTEALKEFIVLPAKEFPLKEGRSIFRDRYAEAFPSANPK
RNPIYQDALEGIASPGLEYYFPLFFEQKDMESQSTLLSYLPKNGIVITDLYLDDELTNYW
KDIFRRYEDRRHNADQPILPPDQLFLQPNQVLEQINSFGRIVASEEVFDEKAGVTNLNTE
IPPRLAVDPKQEKPFAAVKKYVDDATYPVLIVAESAGRRETLKDALRASLGDIPNVDTFE
QFQTSLQSIAITSAPLDRGLVISGQLSVISENQLYEHRVVQRRRKRQQEVSEEFLVRSLT
ELSIGAPVVHIDYGVGRYAGLITLSIDDQDHEFLQLDYADAAKVYVPVTNLHLISRYSGG
DPDLAPLHKLGTDAWSKAKRKALEQIHDVAAELLHIQARRQSKPGFGFERDEKLYMQFAS
GFAYEETLDQANAIEATLYDMQLAKPMDRLVCGDVGFGKTEVAMRAAFVAVQNNKQVAVL
VPTTLLAQQHYESFKDRFADWPVRIEVLSRFGSTKTHNKTIEDLADGKVDIVIGTHKILQ
ENIQFKNLGLMIVDEEHRFGVRDKERIKAMRADVDMLTLTATPIPRTLNMAFSGMRDLSI
IATPPARRLAVKTFVQEHTGDSVKEAILRELLRGGQVYFLHNEVDTIERTAENIRDLVPE
ARVAVAHGQMRERELEQVMQQFYHKEYNVLVCSTIIETGIDVPSANTIIIERADKLGLAQ
LHQLRGRVGRSHHQAYAYLLVPSIKGLKGDAEKRLDAIQRASTLGAGFMLATEDLEIRGA
GELLGEQQSGSMQAIGYSLYMEMLEKATKAIQKGKTPNFDAPLSLTAEINLHMPALIPDD
YLGDVHQRLLFYKRISNTDTQEKLDNIRMELIDRFGIPPQSVKQLFAVHQIRLKAETLGI
TKVDIGGNGGHIEFSPDTPVQAMSIIQMMQKQPTYYRMDGGQRLKVMVMLEDYTKRLQFI
NDLLNHLIAGLKAS
NT seq
3465 nt
NT seq
+upstream
nt +downstream
nt
atgttccaacaagaaatagctcaactcaatttgcaacgccttaaaataggtgaaaaacgc
tggataggtaatttacaaggttctgctgcagcattacttttcaaagaaatcagcaagcaa
aataagcaactatttattcttgtcgcacgtaataatcagcatttggggcaacttgaaagc
gaactcgagttttatggcataaaaccgactattttcccagattgggaaattttgccatat
gaccgtttatctccacatcaagatattgtgtcagagcgtttatctattttatcgaatatg
cctacgcagggcattttacttatttcggcaacaactttagcgcaacgtgttgcaccaacc
acatgggttttaggtgaacattttgatattaaaattgggcaaaagtttgacttagaaaaa
caaaaaataagacttattcaagcaggttatcaccttgtagataccgtatatgatcatggt
gaatttgctgttcgtggaagcattatggatatatatgcttcggggcagaatgcacccatt
cgtatagatttgtttgatgatgaaattgaaagtctaaaattctttgatcctgaaacacag
cgtacaacagaagcattaaaagaatttatagttttacctgcaaaagaatttccgcttaag
gaaggtcgttcgatatttagagatcgttatgcagaggctttcccatctgctaatccaaaa
cgaaatccaatttatcaagatgctttagagggaattgcatcgccaggtttggaatattat
ttcccattgttttttgaacaaaaagacatggaaagccaaagtacactgttatcttactta
ccaaagaatggcattgtcattacagatttgtatttagatgatgaattaaccaattattgg
aaagatatttttcgtcgttatgaagatcgtcgtcacaatgcagatcagccaattttgcca
cctgaccaattatttttacagccaaatcaggtgttagagcaaattaatagttttggtcgt
attgttgcatcggaagaagtatttgatgaaaaagcaggcgttaccaatttaaatacagaa
attccacctcgtttagctgtagatcctaaacaagaaaagccttttgctgcggtaaaaaaa
tatgtagatgatgcaacttatcctgtcttaattgtggcggaaagtgcaggtcgacgtgaa
acgctaaaagatgcattgcgtgcatctttgggggatattccaaatgtagatacgtttgaa
caatttcagacatcgttgcagtctattgcaattacaagtgcacctttagatcgtggtttg
gtaatttcaggacaactcagcgttatttctgaaaatcaattgtatgaacatcgtgttgtt
caacgtcgtcgtaaacgtcagcaagaggtttctgaagagttcttggttcgaagtttaact
gaactaagtattggcgcacctgtggttcatatcgattatggcgtagggcgttatgcaggt
ttaattaccttaagtattgatgatcaagatcatgagtttttacagctcgattatgctgat
gctgccaaagtttatgtgcctgtaactaatttgcatttaattagtcgttatagtggtggt
gacccagacttagcgcctttacataagttaggtacagatgcatggtcaaaagccaaacgt
aaagctctagaacaaattcatgatgttgctgcagagcttttacatattcaagcacgtcgt
caatctaaacctggttttggttttgaacgtgatgaaaagctttatatgcaatttgcctca
ggctttgcctatgaagaaacgctagatcaagcaaatgcgattgaagcgacgctttatgat
atgcaacttgccaagccaatggatcgattggtgtgtggtgatgttggctttggtaaaaca
gaggtggcaatgcgtgctgcttttgtcgcagttcaaaacaataagcaagttgcggtgctt
gttccaaccacgttactagcacaacagcattatgaatcttttaaagatcgttttgcagat
tggcctgtacgcatagaagtgctttcacgttttggttcaacaaaaacacataacaaaacc
attgaagatttagccgatggcaaagttgatattgtgattggtacgcacaaaatattgcag
gaaaacattcaatttaaaaacttaggtttaatgattgttgatgaggaacatcgttttggt
gtacgtgataaagaacgtattaaagccatgcgtgccgatgttgatatgctgactttaacg
gctacaccaattccacgaaccttaaatatggcatttagtggaatgcgtgatttatctatt
attgcaacgccacctgcgagacgtttggcagtaaaaacttttgtgcaagaacatacaggc
gattctgttaaagaagcgattttacgtgaattattacgtggcggtcaggtgtatttctta
cataacgaagtagataccattgaacgtacagcagaaaatattcgtgatttagtgccagaa
gcacgtgtggctgtggcacatggtcaaatgcgtgaacgagaacttgagcaagtgatgcaa
cagttctatcacaaagaatataacgtacttgtttgttcaactattattgaaacaggaatt
gatgttccaagtgccaataccattattattgaacgtgcagataaacttggtttggcgcaa
ttacatcaacttcgtggtcgtgtagggcgttcgcatcatcaagcttatgcatatttgcta
gtaccatcaattaaaggtcttaaaggtgatgcagagaaacgcttagacgcaattcagcgt
gcatcaaccttaggtgcaggctttatgcttgcaacggaagatttagaaattcgtggtgca
ggtgaattacttggtgaacaacaaagtggttctatgcaagctattggttatagcttgtat
atggaaatgcttgaaaaggcgactaaagccattcaaaaaggtaaaacgccaaactttgat
gcgccattgtcattaactgctgaaattaatctgcatatgcctgctctaataccagatgat
tatttgggagatgtgcatcaacgcttgttgttctataagcgcattagtaatacagataca
caagaaaaactcgataatattcgtatggaattaattgatcgctttggtattccgccacaa
tcggttaagcaattatttgctgtgcatcaaatacgtttaaaagctgaaactttgggtatt
acaaaagtagatattggtggtaatggtggacatatcgagttttctccagacacacctgta
caggctatgagtattattcaaatgatgcaaaagcaacctacttattacagaatggatggt
gggcagcgtttgaaagtcatggtaatgcttgaagattacacaaaacgcttacagtttata
aatgatcttttgaatcatttaattgctgggctaaaagcatcttaa
DBGET
integrated database retrieval system
