Candidatus Accumulibacter phosphatis: CAP2UW1_2038
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Entry
CAP2UW1_2038 CDS
T00966
Name
(GenBank) DEAD/DEAH box helicase domain protein
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
app
Candidatus Accumulibacter phosphatis
Pathway
app03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
app00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
CAP2UW1_2038
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
app03019
]
CAP2UW1_2038
Enzymes [BR:
app01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
CAP2UW1_2038
Messenger RNA biogenesis [BR:
app03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
CAP2UW1_2038
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
P-loop_SecA
Ins_allergen_rp
CMS1
Sacchrp_dh_NADP
ERCC3_RAD25_C
Motif
Other DBs
NCBI-ProteinID:
ACV35334
UniProt:
C7RMW7
LinkDB
All DBs
Position
complement(2286837..2288312)
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AA seq
491 aa
AA seq
DB search
MRFDDLGLAPDLLRAIADQGYAEPTPIQAQAIPIVLAGQDLMGGAQTGTGKTAAFTLPLL
QRILPFASASLSPARHPVRVLMLAPTRELAIQVHESVRGYSKYVPLRSACVYGGVDIKPQ
IAEIRLGVEVLVATPGRLLDLIEQRCLNFGSVQALVLDEADRMLDMGFIPDVTRIINLLP
QQRQSLLFSATFSEEIKKLADRMLKSPVLIEVARRNTVSETITHRVHPVAAEAKRALLVK
LLRSSDFNQVLVFTRTKIETNKLARELQRAGIAADSIHGDKSQQERLKALEAFKDGSVLV
LVATDVAARGLDIDELPHVINFELPRTPEDYIHRIGRTGRAGKPGTAVSLVSASEVPYLV
DIEKLIRIQVEQIVVPGFEPEDDYTYPPGGERRRRQPAAASAPPAPLATARSERTQFRAE
QREAASRPGISRRPHHIAADGFDFSKPYESADPHPAATPADGNAAKGIARVEQPHKPRRP
LAALLGGLGRK
NT seq
1476 nt
NT seq
+upstream
nt +downstream
nt
atgcgctttgatgacctcggcctggcacctgatctgctgcgcgcgattgccgaccagggc
tacgccgagccgacaccgattcaggcacaggcgataccgatcgttctcgccggccaggac
ttgatgggcggcgcccagacgggtaccggcaagactgccgccttcaccctgcctctcctg
cagcgcatccttcccttcgccagcgccagcctgtcgcccgcccgccatccggtacgcgtg
ctgatgctggcgccgactcgcgaactcgccatccaggtccatgagtctgtcaggggctac
agcaagtacgttcccttgcgtagcgcgtgcgtttatggcggcgtcgacatcaagccgcag
attgccgagatccgactcggcgtcgaagtgctggtcgcgacgcccggccgactgctcgac
ttgatcgaacagagatgcctcaacttcggcagcgtccaggcactcgtcctcgacgaagcg
gatcgcatgctggacatgggcttcatccccgacgtaacgcgcatcatcaacctgctgccg
cagcagcgccagagcctgctcttctcggcgactttctctgaagagatcaagaagctggcg
gaccggatgctcaaatcaccggtgctgatcgaggtcgccaggcgcaacacggtgtccgag
acgatcacccaccgcgtgcacccggtggccgccgaagccaagcgcgcgctactcgtcaaa
ctcttgagatcgtcggatttcaaccaggtattggtcttcacccgcaccaagatcgaaacc
aacaagctcgcgcgcgagttgcagcgggccggaatcgccgccgattcgattcatggcgac
aagagccagcaggagcgtctgaaggcactcgaagccttcaaggatggctcggtgctggtg
ctggtggccaccgacgtcgcggcgcgcggactcgatatcgacgagttgccgcacgtgatc
aatttcgagttgccgcggacaccggaggactatatccaccgcatcggccgtaccggtcgt
gccggcaagccaggcacggcggtttctctggtctcggccagcgaagtcccctatctggtc
gacatcgagaagctgatcaggattcaggtcgagcagatcgtcgtcccgggcttcgagccg
gaagacgactacacctacccgcccggtggcgaacgccgtcgccggcagccggcggcagcc
tcggcaccgccggcgcccctggcgacggcccgcagcgagcgaacgcagttccgcgccgag
cagcgggaggcggcaagccggcctggcatctcccggcggccccaccatatcgccgccgat
ggtttcgacttcagcaagccctacgaaagcgccgacccgcatcctgcagccacaccggcc
gacggcaacgcggcgaaaggaattgcccgcgtcgaacagccgcacaaacctcgccgcccg
ctggcggcgctacttggcgggctggggcggaagtag
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