Acetobacter pasteurianus IFO 3283-22: APA22_07520
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Entry
APA22_07520 CDS
T01815
Name
(GenBank) ribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
apq
Acetobacter pasteurianus IFO 3283-22
Pathway
apq03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
apq00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
APA22_07520
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
apq03019
]
APA22_07520
03016 Transfer RNA biogenesis [BR:
apq03016
]
APA22_07520
Enzymes [BR:
apq01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
APA22_07520
Messenger RNA biogenesis [BR:
apq03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
APA22_07520
Transfer RNA biogenesis [BR:
apq03016
]
Prokaryotic type
tRNA degradation factors
APA22_07520
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
Motif
Other DBs
NCBI-ProteinID:
BAI08046
LinkDB
All DBs
Position
complement(777815..779845)
Genome browser
AA seq
676 aa
AA seq
DB search
MSASPYASALPSVQELRAFLEGRAGAATGLTDILRNFQLPMRQKAAIRTLLHDMAVTGDL
LDLAPGTLKASIGLPDVARMRVSYIRDDGNAAGFLADDALSRPVVLLIKPPDTPYLFPGD
IVLVRLRPATGTQKREARGLRLLTRLDNNLPVTPARTPEHLLLPCDARLNLPLTPEENAS
SLPLTPRQIGLATPHALPDGTYAGRVHSVLGCADDAGMPSRLSLLIHHPPTAFSEQAEAE
ARQIAQQNAALQGAPAPSGRTDLRHLPLITIDDASAHDFDDALWAEQTADGFHLIVAIAD
VAHWVKPGSALDEEARERGNSIYLPDKVVPMLPLALSAQACSLLPGQDRLCLFADMHITP
QGHVVSAQINRGIMQSAARLTYEAVQHAFDATPHQTSLPPEHPAALLPPTLLPTLRKVGA
TIRQAATQRGVMEREETGWNVQFDATGQPCAFVPRNTQEAHYMVAACMILANQIAAEKLQ
AQALPALFRTHAQPSPDSPRPMARYSTRAAPHYGLRLGNYTHFTSPIRRYADLLAHRALT
QANDSSMQAETSAYTPDVALASQLNFTERRAATIMQDSLNRLAAIFLAPLVGQRMSAHVM
TATRHGLRVRLTKTGTPSFLAWSAFPDRTGMNDDSQHTHASAHHPHVQSGAVLSVTLAGT
CPARGTLMLTDAVYEH
NT seq
2031 nt
NT seq
+upstream
nt +downstream
nt
atgtcggcaagcccgtacgcttctgccctgccatctgtgcaggagctacgggcttttctt
gaaggccgcgccggagccgccactgggctcacggacattctgcgcaacttccagcttccc
atgcggcaaaaggccgccatacgcaccctgctgcacgatatggctgttacgggggatttg
ctcgatcttgctcccggaacactcaaggcatccatcggcctgccagatgtagcccgtatg
cgggtttcctatattcgggatgatggcaacgcggctggctttttggctgatgatgctctc
tcccgccccgttgtattgctgataaagccgccggatacgccgtatctctttcccggcgat
atcgttctggtgcgcctgcgcccagcaaccggcacccaaaagcgcgaggcacgtggcctg
cggctgctgacccggcttgataacaacctgcccgttacccccgcacgcacgccagaacat
ctactgctgccatgtgatgcccggctaaacctgccgcttacgccagaagaaaacgccagt
tctctcccgctcacaccaaggcagattgggcttgcaacgcctcatgctctgcccgatggc
acttatgctggacgtgtacatagcgttttggggtgcgctgatgatgcaggcatgccctca
cgcctgagcctgctgatccatcatccacccaccgcattttcagagcaggccgaggccgaa
gcccggcagatcgcacagcaaaatgcagccttacagggcgcaccagcaccttctggccgc
acagatttacgccacctgccactcatcaccattgatgatgcctcagcgcatgattttgat
gatgcgctctgggccgaacaaacggccgatggctttcatcttatcgtagctattgccgat
gtggcgcattgggtaaagcccggctccgcgctggatgaggaagcgcgagaacggggcaat
tccatttatttgccagacaaagtagtgcccatgctgccactggcactttctgcacaggcg
tgttcactgctgccggggcaggatcggctctgcctatttgctgatatgcacatcacccca
caagggcatgtggtttctgcccaaatcaaccgcgggatcatgcaaagcgcggcccggctg
acatatgaagccgtgcagcacgcatttgatgctacaccccaccaaacctccttgccgccc
gaacatcctgcggccctgttgccgcctaccctgcttcctacgctgcgcaaggtgggggct
actattcggcaggccgccacacagcgcggtgtgatggaacgggaagaaacgggttggaac
gtacagtttgatgccactgggcaaccctgtgcctttgtgccgcgtaacactcaggaagca
cattatatggtggcggcgtgcatgattctggctaatcagatcgcggcggaaaaattgcaa
gcgcaggcattgccagcactattccgcacccatgcgcagcccagcccagatagcccacgc
cccatggcgcgctatagcacccgtgcagctccccattatggcctgcggctgggcaactac
acacattttaccagccccatccgccggtatgcagacctgctggcacaccgcgccctaacc
caagcaaacgactcctctatgcaggccgagacatctgcctacacaccagatgtggctttg
gcatcacagctaaactttacagaacgccgggcagctaccatcatgcaagatagtctgaac
cggctggctgccatctttcttgccccgcttgttggccagagaatgtctgcccatgtcatg
acagcaacacggcatggcttgcgggtgagattgacgaaaaccggaactccgtctttcctt
gcatggtcagcttttccggatcgcacagggatgaatgacgactcgcagcacacccatgcc
tcggcacatcacccccacgtgcaaagtggggctgtgctttcagttaccttggcgggcacc
tgcccggcacgaggtacgctgatgctgactgatgccgtatatgagcactga
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