Ancylobacter pratisalsi: G3A50_00305
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Entry
G3A50_00305 CDS
T06476
Symbol
rnr
Name
(GenBank) ribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
apra
Ancylobacter pratisalsi
Pathway
apra03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
apra00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
G3A50_00305 (rnr)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
apra03019
]
G3A50_00305 (rnr)
03016 Transfer RNA biogenesis [BR:
apra03016
]
G3A50_00305 (rnr)
Enzymes [BR:
apra01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
G3A50_00305 (rnr)
Messenger RNA biogenesis [BR:
apra03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
G3A50_00305 (rnr)
Transfer RNA biogenesis [BR:
apra03016
]
Prokaryotic type
tRNA degradation factors
G3A50_00305 (rnr)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
CSD2
S1
RNase_II_C_S1
Tautomerase
Motif
Other DBs
NCBI-ProteinID:
QIB36002
UniProt:
A0A6P1YS87
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All DBs
Position
61962..64238
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AA seq
758 aa
AA seq
DB search
MPRGLPSREDLTAFIAANGGDVGKREISRAFGLDGSDRIVLKAMLRELAEEGLIGRKRKK
LHVAGGLPAVVMSEVVERDEDGELIAQPIDWDTEAHGEAPHILIKLARRGRVAGPAPAIG
DRVLLKTDEIPEADGRVRHTGHVLKIIEKSRALTLGVFRRDAQGGGRLIPVDKRNMGREL
AIPPDFAGDAEDGDLVSVEIMRHHAYGLPTAKVKERLGSVSTEKAISLIAIHAHGIPSVF
RRDALAEAEEARPARMAGREDWRDLPLVTIDPPDAKDHDDAVHATPDLDPDNEGGFILTV
AIADVAAYVRPGSALDREALSRGNSVYFPDRVVPMLPERISNDLCSLRPLEDRPAMAVRM
VVGANGRKRRHSFHRVMMRSAAKLSYVQAQAAIDGRPDETTQPLLTGVLRPLWDAYAAVK
QARDARSPLELDLPERKILLKPDGTVDRVVVPERLDAHKLIEEFMILANVAAAETLEEKH
VPLVYRVHDQPSLEKMSGLREFLQTLDIKLPKTETVRPAQFNEILSRVVGSELAPLVNQV
ILRSQAQAEYAFENYGHFGLHLRRYAHFTSPIRRYADLIVHRALIRALGLGRDGLPETMT
PEQLAEIAARISASERRAMSAERETVDRLIAHHMAQQMGAEFKGRIAGVTRVGLFVTLDD
TGADGFIPASTLGQDYYRYDEARHALIGDQSGEMHRLGDRVEVKLIEAAPVAGALRFELI
SEGTRVAGAGKGPRGAGKARFRRPEERPRRAGMRGKRK
NT seq
2277 nt
NT seq
+upstream
nt +downstream
nt
ctgccgaggggtcttccaagccgtgaggatctcaccgccttcatcgccgccaatggcgga
gacgtcggcaagcgggagatatcgcgcgccttcgggctcgacggcagcgaccgcatcgtg
ctcaaggcgatgctgcgcgagctggccgaggaagggctgatcgggcgcaagcgcaagaag
ctccacgtcgccggcggcctgcccgccgtcgtcatgtccgaggtcgtggaacgcgacgag
gacggcgaactcatcgcccagccgatcgactgggacaccgaggcgcatggcgaggccccg
cacatcctcatcaagctcgcccggcgtggccgtgtcgccggcccggcgcccgccatcggc
gaccgcgtgctgctgaagaccgacgagatcccggaagcggatggccgggtgcgtcacacc
gggcatgtgctcaagatcatcgagaagtcccgcgccctcacgctcggcgtcttccgccgc
gacgcccagggcggtggacggctgatcccggtcgacaagcgcaacatgggccgcgagctt
gccattcccccggacttcgccggcgatgccgaggacggcgacctggtctcggtcgagatc
atgcgtcatcacgcctatggcctgccgaccgcgaaggtgaaggagcgactcggctccgtc
tcgaccgagaaggcgatcagcctcatcgccatccacgcccacggcataccgagcgtgttc
cggcgtgatgcgctggccgaggccgaggaagcccggcccgcgaggatggccggtcgcgag
gactggcgcgatctgccgctggtcaccatcgacccgcccgatgccaaggaccatgacgac
gcggtccatgccacgcccgatctcgaccccgacaatgagggcggcttcatcctcaccgtc
gccatcgccgatgtcgccgcctatgtgcgccccggttcggcactcgaccgcgaggcgttg
tcgcgcggcaattcggtgtacttccccgaccgggtggtgccgatgctgccggagcggatc
tccaatgatctgtgctcgctgcgcccgctggaggaccgcccggccatggcggtgcgcatg
gtggtgggcgccaatggccgcaagcggcgccacagcttccatcgcgtgatgatgcgttcg
gccgccaagctctcctatgtgcaggcgcaggccgccattgacggccggccggacgagacc
acccagcccctgctgacgggcgtgctgcgcccgctgtgggacgcctatgcggccgtgaag
caggcccgcgacgcccgctccccgctggaactcgacctgcccgagcgcaagatcctgctg
aagcccgacggcacggtggaccgggtcgtggttcccgaacgcctcgacgcgcacaagctg
atcgaggaattcatgatcctcgccaacgtcgccgccgccgagacgctggaggaaaagcac
gtccccctcgtctaccgcgtccacgaccagccatcgctggagaagatgtcaggcctgcgc
gaattcctgcagacgctcgacatcaagctgcccaagaccgaaaccgtccgcccggcgcag
ttcaacgagatcctgtcgcgggtggtgggcagcgagctggcgccgctggtcaaccaggtc
atcctgcgcagccaggcgcaggcggagtatgccttcgagaattacggacatttcggcctg
catctgcgccgctacgcgcatttcacctcgccgatccgccgctatgccgacctcatcgtg
caccgcgcgctgatccgtgcgctcggacttggccgcgacgggctgccggagaccatgacg
cccgaacagctcgccgagatcgccgcgcgcatctcggccagcgagcgccgcgccatgtcg
gcggagcgcgagaccgtcgaccggctgatcgcccaccatatggcccagcagatgggcgcc
gagttcaagggccgcattgccggtgtcacccgtgtcggcctgttcgtcacgctggacgac
accggtgcggacggattcattcccgcctcgacgctcgggcaggactattatcgctatgat
gaagcccgccacgccctgatcggcgaccagagcggagagatgcaccgcctcggcgaccgc
gtcgaagtgaagctgatcgaagccgccccggtggctggcgcgttgcgattcgagcttata
tcggaagggacgcgggtcgcgggcgccgggaaaggaccgcgcggtgccggcaaggcccgc
ttccgccgccccgaggaacggccccgccgcgccggtatgcgcggcaaacgcaaatag
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