Ancylobacter pratisalsi: G3A50_20595
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Entry
G3A50_20595 CDS
T06476
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
apra
Ancylobacter pratisalsi
Pathway
apra03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
apra00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
G3A50_20595 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
apra03400
]
G3A50_20595 (mfd)
Enzymes [BR:
apra01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
G3A50_20595 (mfd)
DNA repair and recombination proteins [BR:
apra03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
G3A50_20595 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
Helicase_C
CarD_TRCF_RID
UvrB_inter
ResIII
Cas3-like_C_2
MFD_D3
SecA_DEAD
RecG_dom3_C
AAA_25
AAA_16
Motif
Other DBs
NCBI-ProteinID:
QIB35840
UniProt:
A0A6P1YSI1
LinkDB
All DBs
Position
complement(4419107..4422622)
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AA seq
1171 aa
AA seq
DB search
MKTSLPNLTSRLAPGRTLTLCNVPTGMEGLVVADLARALAAKVDAPWPTLMVICRDAERM
AEMERGLGFFAPGVEVLPFPAWDCLPYDRASPNAAIIARRMTTLARLARVKGREGGTIVL
TTVNAALQRVPRRAMVATQAFSAAPGNALLLDDVVAWAEMNGFVRTSTVRDTGEYAVRGG
LIDLYPPGMEQPVRLDFFGDTLETIRSFDPETQRTAMQMRALDLVPMSEFQLTTETMRRF
RMAYVAQFGAAQRGDLLYEAISEGRRYPGMEHWLPLLHDGLDTLFDYAPGAPIVTEAQDD
EAANSRLEQIADYYDARRHGLEQGGTANPYKPLPPERLYLTADEWQRARAEAANIAVTGF
ALPDSKDVVDLNGHAARSFAPERADPEGNVFQSAADYLRDLAKKKRTILAAWSDGSRDRL
ATVLADHGLKGMQTVGTRDTAEALPKGTIALGVLGIESGFETDALVVIGEQDILGDRLVR
PKRKARRPQDVIAELGSLTAGDLVVHVDHGIGRFIGLKTIEAMGAPHDCLEIHYAEGSKL
FLPVENLELLSRYGSEDTEAQLDRLGGGGWQTRKARMKSRIREMAAELIKIAAERHLKDA
PRLVPAAGIYDEFRARFPYEETEDQEAAIEAVFDDLGSGHPMDRLVCGDVGFGKTEVALR
AAFAVALNGKQVAVVVPTTLLARQHFKTFSERFKGLPVVVRQASRLVTGKEMSDTKKGLA
DGTVDIVVGTHALLGKAISFKDLGLVIVDEEQHFGVGHKERLKQMRAEVHVLTLTATPIP
RTLQLAMTGVRELSIIASPPVDRLVVRSFVTPFDPLIVREALLRERYRGGQSFYVCPRIE
DLSEVKVFLDKEVPEVRVAVAHGQMAATQLEEIMSAFYDGQFDVLLSTTIVESGLDIPTA
NTLIIHRADMFGLAQLYQLRGRVGRSKTRAYAIFTLPANKTLTAQAERRLKVLQSLDTLG
AGFQLASHDLDIRGAGNLLGDEQSGHIKEVGYELYQEMLEEAIANLKAGITAPVADKWSP
QISIGMPVLIPEEYVADLHVRLSLYRRLADLETDAEIESVGAELVDRFGPLPEEVELLLK
LVAIKALCRRANVEKVDAGPRGMVLTFRDGRFPNPAGFIQYVGKPHVIAKMRPDGKVVFS
EDWPDATARLRGASAILKELAKIAEQGARAA
NT seq
3516 nt
NT seq
+upstream
nt +downstream
nt
atgaagacctccttgccgaatctgacgtcccgcctcgcgccggggcgcacgctcaccctg
tgcaacgtgccgaccggcatggaaggtctcgtggtcgcggacctcgcgcgggcgctggcg
gcgaaggtcgatgcgccgtggccgacgctcatggtgatctgccgcgacgccgagcgcatg
gcggagatggagcgcgggcttggcttcttcgccccgggcgtcgaggttctgccgttcccg
gcctgggactgccttccctatgaccgcgcctcgcccaacgccgccatcatcgcgcgccgc
atgacgacgctggcgcggctggcacgggtgaagggtcgcgagggcggaaccatcgtcctc
accaccgtgaacgccgcactccagcgggtgcccaggcgggccatggtcgccacgcaggcg
ttctcggccgcgccgggcaacgcgctgctgctcgacgatgtcgtcgcctgggcggagatg
aacggtttcgtgcgcacctccaccgtgcgcgataccggcgaatatgccgtgcgtggcggc
ctgatcgacctctatccgccgggcatggaacagccggtgcggctggacttcttcggcgac
acgctggaaacgatccgctccttcgatcccgagacccagcgcaccgcgatgcagatgcgc
gcgctcgatctggtgccgatgagcgagttccagctcaccaccgagaccatgcggcgcttc
cgcatggcctatgtcgcccagttcggcgccgcccagcgcggcgacctgctctatgaggcg
atcagcgagggacggcgctatcccggcatggagcactggctgccgctgctccatgacggg
ctcgacacgctgttcgactacgctcccggcgcgccgatcgtcaccgaagcgcaggacgac
gaggcggcgaattcgcggctggaacagatcgccgactattacgacgcccgccgccacggg
ctggagcagggcggcaccgccaacccctacaagccgctgccgcccgaaaggctgtacctg
accgccgatgaatggcagcgcgcgcgcgccgaggcggcgaacatcgcggtaaccggcttc
gccctgcccgattccaaggacgtggtcgatctcaacggccatgccgcgcgttccttcgcg
cccgagcgggccgacccggaaggcaatgtcttccagagcgcggcggactatctgcgcgat
ctcgccaagaagaagcgcaccattctcgcggcgtggtccgacggctcgcgcgaccggctg
gcgacggtgctggccgatcacggcctgaagggcatgcagacggtcggcacgcgcgacacc
gccgaggcactgcccaagggcaccatcgcgctcggtgtgctcggcatcgagagcggcttc
gagaccgacgccctcgtcgtgatcggcgagcaggacattctcggcgaccggctggtgcgg
cccaagcgcaaggcgcgccgcccgcaggacgtgatcgcggaactgggctcgctcacggcg
ggcgatctcgtggtgcatgtggaccacggcatcggccgcttcatcgggctgaagaccatc
gaggccatgggcgcgccccatgactgcctcgaaatccattatgccgaaggctccaagctc
ttcctgccggtggaaaatctcgaactgctgtcgcgctacggctccgaggacaccgaggcc
cagctcgaccggctgggtggcggtggctggcagacgcgcaaggcgcggatgaagagccgc
atccgcgagatggcggccgagctgatcaagatcgcggccgagcggcacctgaaggacgcg
ccgcgtctggtgcccgcggctggcatctatgacgaattccgcgcccgcttcccctatgag
gaaaccgaggaccaggaagccgccatcgaagcggtgttcgacgatctcggctccggccac
ccgatggaccggctggtgtgcggcgatgtcgggttcgggaagaccgaggtcgccctgcgc
gccgccttcgcagtggcgctgaacggcaagcaggtggcggtggtggtgccgaccacgctg
ctggcgcgccagcacttcaagaccttctccgagcgcttcaagggccttcccgtggtggtg
cgccaggcctcgcggctggtgaccggcaaggagatgtccgacaccaagaaggggctggcc
gacggcaccgtcgacatcgtggtcggcacccacgcgctgctgggcaaggcgatctcgttc
aaggatctgggcctcgtgatcgtcgacgaggagcagcatttcggcgtcggccacaaggaa
cgcctgaagcagatgcgcgccgaggtgcatgtgctgaccctgaccgcgacgccgattccg
cgcacgctgcaacttgccatgaccggcgtgcgcgaactgtcgatcatcgcctcgcccccg
gtggaccgcctcgtggtgcgcagtttcgtgaccccgttcgatccgttgatcgtgcgcgag
gcgctgctgcgcgagcgctatcgcggcgggcagagcttctatgtgtgcccgcgcatcgag
gacctttccgaggtgaaggtgttcctcgacaaggaagtgccggaggtgcgggtcgccgtg
gcccacggccagatggcggcgacgcagctcgaggagatcatgtccgccttctatgacgga
cagttcgacgtgctgctctccaccaccatcgtcgaatcaggcctagacattcccaccgcg
aacacgctgatcatccaccgcgccgacatgttcggcctcgcccagctctaccagctgcgc
gggcgggtcggccgctccaagacgcgcgcctatgcgatcttcacgctgcccgccaacaag
acgctgaccgcgcaggccgagcgccggctgaaagtgttgcagtcgctggatacgctgggc
gccggcttccagctcgcgagccacgacctggacattcgcggcgcgggaaatctgctcggt
gacgagcagtccgggcacatcaaggaagtcggctacgaactttatcaggagatgctggag
gaggcgatcgccaacctcaaggccggcatcaccgcgccggtggccgacaagtggtcgccg
cagatttcgatcggcatgccggtgctgatcccggaagaatacgtcgccgacctgcacgtc
cggctcagcctctaccggcggctggcggatctggagaccgacgccgagatcgaatccgtc
ggcgccgagctggtcgaccgtttcggcccgctgcccgaggaagtggaacttctgctcaag
ctggtcgccatcaaggcgctgtgccggcgggccaatgtcgagaaggtcgacgccggcccg
cgcggcatggtgctgaccttccgcgacgggcggttcccgaatccggccggcttcatccag
tatgtcggcaagccgcatgtgatcgcgaagatgcgcccggacggcaaggtggtgttctcg
gaagactggccggacgcgacggcgcgcctgcgcggggcctccgcgatcctcaaggaactg
gcgaagatcgccgagcagggcgcgagagccgcgtga
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