Abrus precatorius (Indian licorice): 113849598
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Entry
113849598 CDS
T07330
Name
(RefSeq) pre-mRNA-splicing factor SYF1 isoform X1
KO
K12867
pre-mRNA-splicing factor SYF1
Organism
aprc
Abrus precatorius (Indian licorice)
Pathway
aprc03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
aprc00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
113849598
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
aprc03019
]
113849598
03041 Spliceosome [BR:
aprc03041
]
113849598
Messenger RNA biogenesis [BR:
aprc03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Other transport factors
113849598
Spliceosome [BR:
aprc03041
]
Complex B
Other components
Prp19-related factors
113849598
Complex C
113849598
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
HAT_Syf1_CNRKL1_C
HAT_Syf1_M
HAT_Syf1_CNRKL1_N
HAT_PRP39_N
HAT_PRP39_C
TPR_14
Suf
Mad3_BUB1_I
TPR_15
TPR_2
TPR_19
ARM_TT21
ARM_TT21_C
NRDE-2
UTP6_C
Motif
Other DBs
NCBI-GeneID:
113849598
NCBI-ProteinID:
XP_027335412
UniProt:
A0A8B8JV76
LinkDB
All DBs
Position
Unknown
AA seq
920 aa
AA seq
DB search
MAISQELYPSEDDLLYEEELLRNPFSLKLWWRYLIARSEAPFKKRFVIYERALKALPGSY
KLWHAYLRERLDLVRNLPVTHSHYDTLNNTFERALVTMHKMPRIWIMYLQTLTQQKLVTR
TRRTFDRALCALPVTQHDRIWEPYLIFVSQKGIPIETSLRVYRRYLKYDPSHIEDFIEFL
LNSSLWQEGAERLASVLNDDQFFSIKGKTKHRLWLELCDLLTRHANEVSGLNVDAIIRGG
IRKFTDEVGRLWTSLAEYYIRRGLHEKARDVFEEGMSTVITVRDFSVVFDSYSQFEESML
AYKMEEMGLSDEEDDGEENGVAEEEEEEEDIRFRGRLLEEDFERKILRGFWLNDKNDIDL
RLARFDYLMERRPELANSVLLRQNPHNVEQWHRRVKLFEGNPTKQILTYTEAVRTIDPMK
AVGKPHTLWVAFAKLYEQHKDLANARVIFDKAVQVNYKTVDNLASVWCEWAEIELKHNNF
KGALELMRRATAEPSVEVKRRVAADGNEPVQMKLHKSLRLWSFYVDLEESLGTLESTRAV
YERILDLRIATPQIIINYAYFLEEHKYFEDAFKVYERGVKIFKYPHVKDIWVTYLSKFVK
RYGKTKLERARELFENAVESAPADQVKPLYLQYAKLEEDYGLAKRAMKVYDQATKAVPNN
EKLSMYEIYIARAAEIFGVPKTREIYEQAIESGLPDKDVKIMCLKYAELEKSLGEIDRAR
GIYVFASQFADPRSDPEFWNKWHEFEVQHGNEDTFREMLRIKRSVSASYSQVQTHFILPE
YLMQKDQTVNLDEAKDKLKQAGIPEDEMAALERQLAPAAENTVTKERKVGFVSAGVESES
DGGLKTSANHEDIELPEESDSDDDDDKVEIAQKDVPSAVFGGLIRKRDENENNGEVDGAK
DKDNENRLGALERIKRLKRN
NT seq
2763 nt
NT seq
+upstream
nt +downstream
nt
atggcgatttcgcaggagctatacccatcggaagatgacctcctttacgaagaagagctt
cttcgaaaccctttcagcctcaaactatggtggcgttacctcatcgctcgttcagaagct
ccgttcaagaagcgcttcgtcatctacgaaagagccctcaaagcacttcccggaagctac
aagctttggcacgcttaccttcgcgaacgcctcgacctggttcgcaacctcccagtcact
cactctcactacgacacactaaacaacaccttcgaacgcgcccttgtcacaatgcacaaa
atgccccgaatttggatcatgtacctccaaaccctaacgcaacaaaaattggtcactcgc
actcgcagaaccttcgatagagctctctgcgctctccctgttacccagcacgatcgcatt
tgggaaccctatctcattttcgttagccagaagggtattcccattgaaacttctcttcgt
gtttatcggaggtacttgaaatacgacccttctcatattgaagatttcattgagtttttg
cttaattctagtctatggcaagagggtgctgagaggttggcttcggttctgaatgatgat
cagtttttttcaattaagggtaaaaccaagcataggttgtggttagagctctgtgatctg
ctcactcggcatgctaatgaggtttctgggttgaatgtggatgccattattaggggtggg
attaggaaattcactgacgaggtgggtagactttggacttcgcttgctgagtattacatt
aggaggggtttgcatgagaaggcgagggatgtgtttgaagagggaatgtccactgttatt
actgttagggattttagtgttgtgtttgattcctactcgcaatttgaagagagtatgctt
gcttataaaatggaggagatgggcttgagtgatgaggaggacgatggggaagaaaatggg
gttgcggaggaggaggaggaggaggaagatattcgtttcagaggaagattgttggaggag
gactttgagaggaagattttacgtgggttttggttgaatgacaagaatgacatagacttg
agattggctcgatttgattaccttatggaaaggaggccagaattggctaacagtgtgctg
ttgcggcaaaatcctcataatgtagaacagtggcaccgaagggtgaagctttttgaaggt
aatcctacgaagcagatattgacttacactgaagcagtgaggacaattgatcccatgaag
gcagtaggaaagcctcatactttgtgggttgcttttgctaaactgtatgagcagcacaaa
gatcttgccaatgctcgtgtcatatttgataaggcagtgcaggtgaactacaaaactgtg
gataatctggctagtgtctggtgtgagtgggcagaaattgagttaaagcataataatttc
aaaggagcacttgagctgatgaggcgggctacagcagaaccatcagttgaggtcaagaga
agagtggccgctgatggaaatgaaccagttcagatgaagctgcataagtctttgagattg
tggagcttttatgttgatttggaggaaagcctgggtactttggagtctactcgggcagtt
tatgagcggatattggatttacgaatagccactccacaaataataatcaattatgcttat
tttcttgaggagcataaatacttcgaagatgcttttaaagtttatgaaagaggtgtgaag
atatttaagtatccccacgttaaagatatatgggttacatatctatctaaatttgtgaag
agatatggaaagacaaaattggagagagcgagggagctatttgaaaatgcagttgaatcg
gccccagctgatcaagtgaaacctctttatctgcaatatgctaagctggaggaggactat
ggactagccaagcgagctatgaaggtttatgaccaagcaacaaaggccgttcctaacaat
gagaagttaagcatgtatgaaatatatattgctcgtgcagctgagatatttggtgtaccc
aaaacacgggagatctatgagcaagcaattgaatctggtcttccagacaaggatgtcaaa
attatgtgtttgaagtatgctgagctggaaaaaagcttgggagaaattgatcgggcccgt
ggaatatatgtatttgcctctcagtttgcagatccacgatctgatccagagttttggaat
aagtggcatgagtttgaggttcagcatggaaatgaagatactttcagagaaatgcttcgt
attaagcggagtgtctctgccagctacagtcaggtacagacacattttatactgcctgag
tatttgatgcaaaaggatcaaactgtgaatcttgacgaggccaaagacaaattgaaacag
gctgggatccctgaagatgaaatggctgctttagaaaggcaattagccccagcagctgaa
aatacagtgacaaaagagagaaaagttgggtttgtgagtgcaggagtggaatcagagtct
gatggagggctaaaaactagtgcaaatcatgaggatattgagctaccagaagaaagtgac
tctgatgatgacgatgataaggttgaaattgcacaaaaagatgttccttctgctgttttt
ggtggtttgattagaaagagagacgaaaatgaaaataatggcgaagtagatggtgcaaaa
gacaaggataatgaaaatcggcttggtgcccttgagagaataaagaggctaaaacgaaat
taa
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