Abrus precatorius (Indian licorice): 113853577
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Entry
113853577 CDS
T07330
Name
(RefSeq) protein PAT1 homolog isoform X1
KO
K12617
DNA topoisomerase 2-associated protein PAT1
Organism
aprc
Abrus precatorius (Indian licorice)
Pathway
aprc03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
aprc00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
113853577
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
aprc03019
]
113853577
Messenger RNA biogenesis [BR:
aprc03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
113853577
mRNA degradation factors
5'-3' decay
Decapping complex
113853577
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
PAT1
DUF1088
Motif
Other DBs
NCBI-GeneID:
113853577
NCBI-ProteinID:
XP_027339820
UniProt:
A0A8B8K7V9
LinkDB
All DBs
Position
Unknown
AA seq
818 aa
AA seq
DB search
MVDMDGFGAGVDVEGAPNTDDPRPLGNVSTDEAVFDASQYAFFGQDAVVHEVELGGLEDD
DDLPESNEEEFILNREEAEDVKSLSDIDDLSTTFWKLNKVVSGPNSTGFIGERGTRENSS
ADWAHRDDVLNWYDQNNYDSESSLDSRKVSSQPRSSLSHLHEAKPLYRTSSYPEQQRQQQ
HHHLQHCSSESAPNWFDQHFYGTETTQDGKRWSSQPHSSIAHLQESKPLQRTFYPDKQQE
FPHFSSEPILVPNSSFTSYPPPGSRSQQASLSHNAGHLNIPYHAQMASSPQNRSHFSSSA
LPLSGLNHGPPFSGNMRQFPTGPPLNKIIQNQLVNQAGLYPGDHPNISSGIPMINKYDQM
LGLMELRDQMPKSAQIGRQNIRFSPQGLDMIGQRGNSGWPRFRSKHMTTEEIENILRMQL
AATHSNDPYVDDYYHQACLAKKTSGAKLRHHFCPTQIRELPLRPSSNAEPHAFLQVDALG
RVPFSSIRRPRPLLEVDPPNSSPAGSPEQNISEKPLEQEPMLAARVTIEDGICLLLDVDD
IDRFLQFNQLQDGGIQLKRKRQGLLEGLAASLQLVDPLGKNGRTVTLAAQEDFVFLRIIS
LPKGRKLLAKYLQLLFPGGELMRIVCMAISRHLRFLFGGLPSDPAAAESVINLAKVVSKC
IRGMDLSALSACLAAVVCSSEQPPLRPLGSSAGDGASLILASLLERATELLTDPHAASNY
NIANRSLWQATFDEFFGFLTKYCVNKYDGIMQSFLIQGTPNMSVIGPDAAKAISKEMPVE
LLRASLPHTDERQKKLLLDFAQRSIPVVGFNGNSELLR
NT seq
2457 nt
NT seq
+upstream
nt +downstream
nt
atggtggatatggatgggtttggggctggggttgatgttgagggggctcccaacacagat
gatcctagaccactagggaatgtttccacagatgaagctgtttttgatgcatcgcaatat
gcatttttcggtcaagatgctgtcgttcatgaagttgaattgggagggttagaagatgac
gatgatttgcctgagtctaatgaggaggagttcattctcaatagagaagaggctgaggat
gtaaaatctctttctgatattgatgatcttagcactacattttggaagttgaacaaggtt
gtaagtggaccaaacagcacaggatttattggtgaacggggaacaagagaaaactcttca
gctgattgggcacacagggatgacgttcttaactggtatgaccagaataattatgatagt
gaaagttctctggatagcagaaaagtgtcatcacagcctcgttcttctctttcccatttg
catgaagcaaagcccttgtacagaacttcttcatatcctgagcagcaaagacagcaacaa
catcaccaccttcaacattgctctagtgaatcagctcccaattggtttgatcagcatttt
tatggtactgaaactactcaggatggcaaacgatggtcgtcacagccacattcctccatt
gcacacttacaagagtcaaagcccttgcagagaactttttatcctgacaagcagcaggaa
tttcctcatttttcaagtgaaccaattttggtaccaaactcttcatttacttcttatcct
ccccctggtagcagatctcagcaggcttctctaagtcataatgcaggccacctaaacatt
ccttatcatgctcagatggcatcatcacctcaaaatcgttcccatttctccagttctgca
ctaccattgagtggattaaaccacgggccaccttttagtggaaacatgcgccaatttcct
actggtccccctcttaataagataatacagaatcaattggtaaaccaggcagggttatat
cctggagatcatccaaatatttcctcaggtattcccatgattaacaaatatgaccagatg
cttgggctgatggaactgagggatcaaatgccaaaatcagctcaaataggtagacaaaat
atccggttttctccacagggtcttgatatgattgggcagagaggcaatagtggatggccc
cgatttaggtctaagcatatgacaactgaggaaattgagaatattcttagaatgcagctt
gcagcaacacacagtaatgatccatatgttgatgattattaccaccaagcctgtcttgca
aaaaaaacttctggtgctaaattgaggcatcacttttgtccaactcaaataagggaacta
cctctacgaccctcttctaatgctgaaccacatgcttttcttcaggtcgatgctctaggg
agggttccattctcatcaattcgcaggccccgtcctctactagaagttgatcctcctaat
tcctctcctgctggtagccctgagcagaacatttctgagaagccccttgaacaggaacca
atgcttgcagctagagtcaccattgaagatggtatctgccttcttcttgatgtggatgat
attgatcgttttctacagtttaatcagcttcaagatggtgggattcagttaaaacgaaaa
cggcaaggtcttctggaaggacttgctgcctcacttcaattagttgatccactgggaaag
aatggacgtacagttacacttgctgcacaagaggactttgtttttctcaggatcatttct
ctacccaagggtcgaaagctacttgctaagtaccttcaactgctttttccaggtggtgag
ctaatgcgaatagtctgcatggccatctctcgtcatttaaggttcttatttggtggcctt
ccctctgatcctgctgcagctgaatctgtaattaaccttgcaaaggtggtttcaaagtgc
atccgcggaatggatctcagtgcattaagtgcttgtctagcagcagttgtttgttcttct
gagcagcctcccttacgtccccttggaagttctgctggagatggggcttcccttatttta
gcatctctgcttgagagggcaactgaacttctaactgatcctcatgctgctagcaactac
aatattgcaaatcgatcgctttggcaggctacatttgatgaattctttggttttctgacg
aagtattgtgtgaacaagtatgatggtatcatgcaatcattcctcatacaggggactcca
aatatgtctgtcattggacctgatgctgcaaaagctattagtaaggaaatgccagttgag
ctattacgggcaagtctacctcacaccgatgagcgccagaaaaaactattacttgatttt
gctcagcgctctatacctgtagttggatttaatggcaattctgagttacttagataa
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