Abrus precatorius (Indian licorice): 113853733
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Entry
113853733 CDS
T07330
Name
(RefSeq) probable pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH4 isoform X1
KO
K12818
ATP-dependent RNA helicase DHX8/PRP22 [EC:
5.6.2.6
]
Organism
aprc
Abrus precatorius (Indian licorice)
Pathway
aprc03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
aprc00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
113853733
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
aprc03041
]
113853733
Enzymes [BR:
aprc01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
113853733
Spliceosome [BR:
aprc03041
]
Complex C
Other components
Step II factors
113853733
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
OB_NTP_bind
Helicase_C
DEAD
AAA_22
HA2_N
HA2_C
AAA_19
cobW
ABC_tran
AAA_16
SLFN-g3_helicase
nSTAND3
AAA_30
SRP54
ATPase_2
AAA_29
FtsK_SpoIIIE
nSTAND1
PhoH
T2SSE
Cas3-like_C_2
AAA_23
Motif
Other DBs
NCBI-GeneID:
113853733
NCBI-ProteinID:
XP_027340107
UniProt:
A0A8B8K8K2
LinkDB
All DBs
Position
Unknown
AA seq
697 aa
AA seq
DB search
MATLPIVQYEEKIIETVERNPVVVVIGETGSGKSTQLSQMLHRRRYGKIAVTQPRRVAAV
SVARRVAQELGVKLGEEVGYAIRFEDRTSHNTRIKYLTDGVLLREILANPELNEYSVIIL
DEAHERSLNTDILMGLMKRLVRIRSSDLKVLITSATLDGDKVSNFFADCPVLTIPGKLYP
VEVLYSKERPSSYLEASLKTALDIHIHDLEGDILIFVTGQDDIEKLVSKLEDKVRALEEG
SCMDAIILPLHGSLPPELQVRVFNPPPPNCRRIIVATNIAETSLTVDGVVYVIDSGYVKQ
RQYNPSSGMYSLDVVQISKVQANQRAGRAGRTRPGKCYRLYPSQLYHDEFLDVTVPEIQR
SSLAGSVLYLKSLDFPDIDILKFDFLDSPSSESLQDALKQLYLIDSIDENGVITSIGRKM
AELPLEPSLARTLMEASDYGCISEALTVAAMLSAETTLLPGQRKTDKKRKHTISNLPDGS
GLGDHIQLLQIYECWDQTDYDIGWCKDNGLQVRGMLFVKDVRKQLSQIMQKIAKGPLDVR
ANGKRDEFRQDYRNLRKALCVGYANQLAERKMHHNGYRTLGFQAQVVQVHPSSVMNPDEL
GKFPDYVVYHELIATPRPYMRNVCAVEMRWVIPITNKLKTLDVYKLSSGGVHNVEEESEK
NLPHLPKKDVEVAGTTDDRESRIQAARERFLARKAQK
NT seq
2094 nt
NT seq
+upstream
nt +downstream
nt
atggctacacttcccatagtccaatatgaagaaaagatcattgaaaccgttgagcggaac
cctgttgttgtcgtcatcggagaaaccggttccggcaagagcactcaactctctcagatg
cttcaccgccgccgttacggcaaaatcgccgtcactcagccccgtcgagttgccgcggtc
tccgtcgccagacgagttgcacaagagcttggtgttaagcttggtgaggaagtagggtac
gcaattcgattcgaggacaggacttcacacaacacgcgcattaagtaccttactgatgga
gttcttcttcgtgaaattcttgctaatcctgagttaaatgagtattctgtaatcatattg
gatgaagctcatgaacggagtttaaacacggatatattgatgggactgatgaaacgcttg
gttagaatacgttcctcggatctcaaagttttgatcacgtccgcaacacttgatggcgat
aaagtatcaaacttctttgccgattgtcccgttttgaccattccaggaaaattgtatccg
gttgaggttctttatagcaaggagcgtccctctagctatcttgaggcttccctgaaaact
gctcttgatatacatattcatgacctggaaggggatattttaatattcgtgactggacag
gatgacatagagaagctggtatctaagttagaagataaagtacgggcccttgaggaaggt
tcctgcatggatgctataatccttcctctacatggttctttgccacctgaattgcaggtg
cgtgtatttaatccaccacctccaaattgcagacgaattattgttgcaacaaatattgct
gaaacttccttgactgttgatggtgtagtgtatgttattgactctgggtatgtgaagcaa
agacagtataatccatctagtggcatgtattctcttgatgttgttcaaattagcaaagtg
caagctaatcagcgtgcaggtcgagctggacgaacacgtccagggaaatgctatcgtcta
tacccttcccaactttaccatgatgagttcttggatgttacagttcctgaaattcagaga
tcttcgcttgcaggcagtgttctttacttgaagtcattggacttcccagatattgacatt
ctcaaattcgactttcttgattctccatcatctgagtccttacaagatgccttgaagcaa
ttatatctgattgattctattgatgaaaatggtgtgattacaagtattggacggaaaatg
gctgagcttccgttagagccttccttagcaagaactttaatggaggcaagcgattatggt
tgcatatccgaggctttgactgttgctgccatgttatcggctgaaacaacattgctacca
gggcagagaaaaactgataaaaagaggaaacacacaatatctaaccttcctgatggttct
ggcttgggtgatcacattcaattgctgcagatatatgagtgttgggatcaaactgattat
gacattggttggtgcaaagacaatggcttgcaggtgcgagggatgttgtttgtcaaagat
gtccgtaagcagttatctcagataatgcagaaaatagcaaagggaccactggatgtaagg
gcaaatgggaaaagggatgagttccggcaagattatcgaaatttgaggaaggctttatgt
gtgggctatgcaaatcaattggctgaaagaaagatgcatcacaatggatatcgaactctg
ggtttccaagctcaagtagttcaggtacatccatcctctgtgatgaatcctgatgagctg
gggaagttcccagactatgttgtgtaccatgaactaattgcaactccgcggccatacatg
agaaatgtgtgtgctgttgagatgagatgggttatacccattactaacaagcttaagacc
ctagatgtgtacaaattaagcagtgggggtgttcataatgttgaggaggaatctgagaaa
aatcttccacatttacccaagaaggatgttgaggttgctgggactactgatgaccgtgaa
agtagaatccaagctgctagagaacggtttcttgctcgtaaagcccagaaatga
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