Abrus precatorius (Indian licorice): 113860710
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Entry
113860710 CDS
T07330
Name
(RefSeq) DExH-box ATP-dependent RNA helicase DExH9 isoform X1
KO
K12598
ATP-dependent RNA helicase DOB1 [EC:
5.6.2.6
]
Organism
aprc
Abrus precatorius (Indian licorice)
Pathway
aprc03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
aprc00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
113860710
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
aprc03019
]
113860710
03041 Spliceosome [BR:
aprc03041
]
113860710
03009 Ribosome biogenesis [BR:
aprc03009
]
113860710
03016 Transfer RNA biogenesis [BR:
aprc03016
]
113860710
Enzymes [BR:
aprc01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
113860710
Messenger RNA biogenesis [BR:
aprc03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
TRAMP complex
113860710
Spliceosome [BR:
aprc03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
113860710
Complex C
U4/U6.U5 tri-SnRNP related factors
113860710
Ribosome biogenesis [BR:
aprc03009
]
Eukaryotic type
Pre-60S particles
Helicases
113860710
Transfer RNA biogenesis [BR:
aprc03016
]
Eukaryotic type
tRNA degradation factors
TRAMP complex
113860710
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DSHCT
MTR4_beta-barrel
DEAD
MTR4-like_stalk
DEXQc_Suv3
ResIII
Helicase_C
ATPase_2
Motif
Other DBs
NCBI-GeneID:
113860710
NCBI-ProteinID:
XP_027349006
UniProt:
A0A8B8KYL7
LinkDB
All DBs
Position
Unknown
AA seq
981 aa
AA seq
DB search
MGSHSHSLKRKSPEEPSTSNSQIVHDCVHHVSYPDGYAHPPSSSPHAHTEPAKKFPFPLD
PFQSQAIVCLENGESVMVSAHTSAGKTVVALYAIAMSLRNGQRVIYTSPIKALSNQKYRE
FKEEFSDVGLMTGDVTIDPNASCLVMTTEIWRSMQYKGSEITREVAWIIFDEVHYMRDRE
RGVVWEESIVLSPKNSRFVFLSATVPNAKEFADWVAKVHQQPCHIVYTDYRPTPLQHYIF
PAGGNGLYLVVDEKGKFREESFQKALNALVPAGDGDKKKENGKWQKGLVMGRVGEESDIF
KMVKMIIQRQYDPVILFSFSKRECEFLAMQMAKMDLNGDDEKDNIEKIFWSAMDMLSDDD
KKLPQVSNMLPLLKRGIGVHHSGLLPILKEVIEILFQEGLIKCLFATETFSIGLNMPAKT
VVFTNVRKFDGDKFRWISSGEYIQMSGRAGRRGIDERGICILMVDEKMEPSTAKNMVKGA
ADSLNSAFHLSYNMILNQMRCEDGDPENMLRNSFYQFQADRAIPDLETQIKALEEERESI
VIEEESSLTDYFNLLEQHRSLNKEVRDIVLSPRHCLPFLQPGRLVSLERTSSDEDLCPIF
VDDHLTWGLVINFERVKSIFEDDASVKPEDASYNVDVLTRCVVKKDKLGKKSVKIVPLKE
LGEPLVVSVPLSQINTISSLRLYIPKDLLPLEARENTLKKVLETLSRFGDKGLPLLDPEE
DMKIQSSSYRKASRRIEALESLFEKHEIAKSPLIKQKLKVLQRKLELSTKIKAIKKTLRS
STALAFKDELKARKRVLRRLGYATNDNVVELKGKVACEISSADELTLTELMFNGVLKDIK
VEEMVSLLSCFVWQEKIHDAAKPREELDLLFVQLQDTARRVAQLQLECKVQIDVESFVKS
FRPDIMEAVYAWAKGSKFYEIMEITQVFEGSLIRAIRRLEEVLQQLIEAAKSIGETQLEE
KFEEAVSKIKRDIVFAASLYL
NT seq
2946 nt
NT seq
+upstream
nt +downstream
nt
atggggtcacactcgcattcgctgaagaggaagtcgccggaagagccatcgacttcaaat
tcgcaaatagtgcatgattgtgtgcatcacgtctcatatccagatggttacgcccaccct
ccttcttcatcacctcacgctcacactgaacctgctaagaagttcccttttccgctcgac
ccttttcagtcccaagccattgtttgccttgaaaacggtgaatccgtcatggtgtctgca
cacacgtctgctgggaaaaccgtggtggcgttatatgcgattgctatgtccctccgcaat
ggccagcgcgttatatacacttcccctatcaaggcacttagcaaccagaaatatagagaa
ttcaaggaagaattctccgatgttggtttgatgacgggagacgtcaccattgatcccaat
gcttcttgcttggtcatgactacggaaatctggcgtagcatgcagtacaaggggtctgag
ataaccagggaggtggcttggattatttttgatgaggtgcattacatgcgagatcgtgag
agaggtgtggtttgggaagagagcattgttttgtcgcccaagaattcccgttttgtcttc
ctgtctgccaccgtcccgaatgcaaaggaatttgctgattgggttgcaaaggtgcaccaa
cagccttgtcatattgtttatactgattaccggccaactccccttcagcattatattttt
cctgctggaggtaatggtctatatttggttgtggatgaaaaaggaaagtttcgtgaagaa
agctttcagaaagctttgaatgctcttgttcctgccggtgatggtgataagaaaaaagaa
aatggcaagtggcaaaaaggtttggtgatgggcagagttggtgaagaaagtgacatattc
aagatggtgaaaatgatcattcagcgtcaatatgatcctgtgatactgttcagctttagc
aaaagggagtgtgaatttcttgcaatgcagatggcaaaaatggatcttaatggggatgac
gagaaggacaatatagaaaagatattttggagtgctatggatatgctttcagatgatgat
aagaagctgccccaggtttcaaacatgctgcccttgctgaagcgtggaataggagtacat
cactctggtttactcccaattttaaaggaagtgattgagatcttatttcaagaagggcta
atcaagtgtttgtttgccacagagaccttcagcattggtttgaacatgcctgcaaaaact
gttgtttttacaaatgtccggaaatttgatggggacaaatttaggtggatatccagtgga
gaatatatacaaatgagtggtcgtgctggtcgacgggggattgatgaacgtggaatatgt
atcctcatggttgacgagaagatggagccttctactgctaaaaatatggttaagggggca
gctgatagtttaaacagtgcctttcatttaagctacaacatgattttgaaccaaatgcgg
tgtgaagatggtgatcctgaaaacatgctccgtaattctttttatcagttccaagctgat
cgtgccattcctgatcttgagacacaaataaaggctcttgaagaagagagggaatcgatt
gtaattgaagaagaaagtagtttaacagattatttcaatctgctggagcagcatagaagt
ttgaataaggaggttcgtgacattgtgctctctccaaggcactgtttaccttttctacag
cctgggaggcttgtttctcttgaacgcacttcaagtgatgaggatctttgccccattttt
gttgatgaccacttgacttggggcttggtcattaattttgaaagggttaagagtattttt
gaagatgatgcaagcgtaaaaccagaagatgcatcttacaatgttgatgttcttacaaga
tgtgtggtgaagaaagataaacttggaaaaaaatcggttaagattgtccctctgaaagaa
cttggagaacctttagtggtttcagttcctctctctcagatcaatacaataagcagtctg
cgtctatacataccaaaggatcttttacccttggaagctcgagaaaacacgctgaagaaa
gtgttggaaacactttctagatttggtgacaaaggattgccacttctagatcctgaagaa
gacatgaagattcagagcagctcgtacagaaaagcatctcgcagaatagaggccttggag
agcctatttgaaaagcatgaaattgcaaaatcaccacttataaagcagaaattaaaagtt
ctacagaggaagctagaactatccacaaagataaaagccattaagaaaacattaagatct
tcaactgctttagccttcaaggacgaacttaaggcaagaaagagagttcttaggaggcta
ggatatgctacaaatgacaatgtggtggagttgaaagggaaggttgcttgtgaaattagt
agtgcagatgaattgaccctaactgaactaatgttcaatggtgtcttgaaggacataaag
gtggaggagatggtttctctcctttcttgttttgtctggcaagaaaaaattcatgatgct
gccaaacctcgagaagaacttgatctgctttttgtgcaactacaagacacagctcggaga
gttgcccaacttcagctagagtgcaaggtgcaaattgatgttgagagctttgttaagtcg
tttaggcctgatattatggaggctgtgtatgcttgggcgaaaggttcaaagttctatgag
atcatggaaatcacacaagtctttgaaggtagcttgattagagcaattagacgactagag
gaggttcttcagcagttaatagaagcagcaaagtcaattggggaaactcaacttgaggag
aagtttgaagaagctgtatccaagatcaaaagggatattgtctttgcagcatcactgtat
ttatag
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