Candidatus Absconditicoccus praedator: HLG78_00040
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Entry
HLG78_00040 CDS
T07729
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
aprd
Candidatus Absconditicoccus praedator
Pathway
aprd03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
aprd00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
HLG78_00040 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
aprd03021
]
HLG78_00040 (rpoC)
03400 DNA repair and recombination proteins [BR:
aprd03400
]
HLG78_00040 (rpoC)
Enzymes [BR:
aprd01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
HLG78_00040 (rpoC)
Transcription machinery [BR:
aprd03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
HLG78_00040 (rpoC)
DNA repair and recombination proteins [BR:
aprd03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
HLG78_00040 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Motif
Other DBs
NCBI-ProteinID:
UFX82528
LinkDB
All DBs
Position
complement(6722..10573)
Genome browser
AA seq
1283 aa
AA seq
DB search
MLQKGFEGLMVKLASPEDIKSWSYGSVTSPDTINYRTGKPKQGGLFCESIFGPIRNFECS
CGKYKGVRYKGIVCERCGVEVTSSRVRRERMGHIELASPVVHIWYVKATPSRIGLLLNLS
VKEIEKILYFVKYIVVDYDKNQKKNAIANLDKSFQNKLTDLDKYYDEEISSLEKQKDELS
NKEYQQKKQEIEKTYSENKDDLEKEYNRIKSILSNLKKGSTILESDYRNIFYKYEGVFTF
KSGSTAILKLLEDIDLEKEISEIIKNFRQLKGPERDKTFKRLRLLINLHVSKVRPEWIVL
KNLPVMPPDLRPVVQLEGGKFASSDINLFYRRVLMRNLRLQKMIDAGMPDVIKKNEIRLL
QESVNNLIVGEKDSATKNAGMKVFKSLTDMLSGKEGIFRKNLLGKRVDYSGRSVITVGPN
LKLDECGLPIYIAVRMFSPFIISKLIEKNIAHTPKQAEKLIKDEDPVALKILKEVIDGKY
VLLNRAPTLHRLGIQAFRIRLMPGKTIRIHPLVCPAFNADFDGDQMAAHLPLSEESQKEA
KELVAADKNILAPASGSPIITHTQDMILGAYYLTNDKLSEDKVVGRFGSIEEVVNAYYSS
NVQLGDKVVLYYNGEEIKTTVGRVVFNSLIPEKIRFIDEIVRKGQLKSILDKVYNEYGRE
KTVEVADNLKDWGFKYATISAVSVNIFDLHVPKEKQALLAEGDEKVKKIHDFWFKGFLSD
DEKHRLIVNIWSDVKSEIEKLVKMSYVDGNDVYSLVDSGARGNWSQLSQLSGIKGLVVSP
SGSVIELPIKSSLIEGFSPIEYFIAAHGARKGKADTALKTAESGYLTRRLVDASQEVVVK
EHDCGTDTGILISKDEAEIRGDNFYDMLYGRVSLEDLKDDNGNTIVQKDELINANHLQKI
KESNIDMINVRSPLGCKIESGVCQKCYGMDLSKRDVADIGAAVGVIASQSIGEPGTQLTM
RTFHGGGVASADGDMTQGIKRIEELFEIRKPKNSAIVAPFDGILKIIETGKLLEAEITSN
PEKINYIVKEGYTITVKNGDYLKKGGVYAMKGKSQLKVKQEGVVETVGKDHIVLSVTEKY
RKPLAAGTQFKVKDGAQVYKGQVVSTGALDIKEYKSIVSDIEAQKYIVREIKRVFTSQGQ
DVNDKYMEIIVKQLFSKVLIDDSGDSALVPGSVVSYESYLKINEELTAEGKKPASGERLA
LGLTQIAKESESWLSSASFQETMRIMVDSSTKGAIDQLHDLKSNVIIGRLLPLGDVYRNE
YFGQDYEEQDASKVEQDSSQNDN
NT seq
3852 nt
NT seq
+upstream
nt +downstream
nt
atgttacaaaaaggttttgagtgattaatggtaaaattagcttcaccagaagatataaaa
tcttggtcttactgatcagttacatctccagatactataaattatagaacaggaaaacca
aaacaatgatgactgttttgtgagtcaatttttgggcctattaggaattttgaatgtagt
tgttgaaaatataaatgagtaagatataaatgaatagtttgtgaaagatgttgagtagaa
gtaacaagctctagagttagaagagaaagaatgtgacatatagaactagcatctcctgtt
gtacatatttggtatgtaaaagctactccttctagaatttgactattattgaatttgtca
gtaaaggaaattgagaaaatactatattttgtaaaatatattgtagtagattacgataaa
aaccaaaagaaaaatgcgatagcaaatcttgataaaagttttcaaaataaattaactgat
cttgataaatattatgatgaagaaatatcttctttggaaaagcaaaaagatgagttgtca
aataaagagtaccaacaaaaaaagcaagaaatagaaaaaacatattcagaaaataaagat
gatcttgaaaaagaatacaatagaattaagtctatactttcaaacctgaagaaatgatca
acaatccttgaaagtgattatagaaatatattttataaatatgagggtgtttttactttt
aagtcatgatcaacagcaattttgaaattgcttgaggatatagacctagaaaaagaaata
tcagaaataataaaaaatttcagacaacttaaatgaccagaaagagataaaacattcaaa
agacttagattgttaatcaacttacatgtttctaaagtaaggccagagtggattgtgctt
aaaaatcttccagtaatgcctccagacttaagacctgtagtacaacttgaatgaggtaaa
tttgcatcttctgatattaaccttttttatagaagagtattaatgagaaacttaaggttg
caaaaaatgatagatgcaggtatgcctgatgtgattaagaaaaatgagataagactctta
caggaatctgtaaataatcttatagtttgagaaaaagattctgctacgaaaaatgcaggt
atgaaggtgtttaagtctttgactgatatgctttcttgaaaagagtgaatatttagaaaa
aaccttttgtgaaagagagtagattattcctgaagatcagttattacagtatgaccaaat
ttaaaacttgatgaatgttgacttcctatatatattgctgttaggatgttttcaccattt
attatatcaaaacttatagaaaaaaatatagctcatactccaaagcaagcagaaaaatta
attaaagatgaagatcctgtagcattaaaaatactaaaagaagttatagactgaaaatat
gtgcttttgaatcgtgcacctacacttcataggctttgaatacaggcatttagaattcgt
cttatgccttgaaaaacaataagaattcatccgctagtttgtcctgctttcaatgcagat
tttgactgagatcaaatggctgcccacctacctctttctgaggaatcccaaaaagaagct
aaagaactagttgcagcagacaaaaatatattggctcctgcttcatgatctccaataatt
acacatactcaagatatgattttgtgagcatattatttgacaaatgataaactaagtgaa
gataaagttgtatgaaggtttggtagcatagaagaagtagttaatgcctattattctagt
aatgttcaactatgagataaagttgtattgtattataatggagaagaaataaaaacaact
gtatgaagagtggtattcaatagtcttattccagaaaaaattagatttatagatgaaata
gtaagaaagggtcaattgaagtctatacttgataaagtatataatgagtattgaagagag
aaaacagttgaagtagcagacaatttgaaagactggtgatttaagtatgctactatctca
gcagtaagtgtaaatatatttgatctacatgttccaaaagaaaaacaagctttgttggcc
gaaggtgatgaaaaagtaaagaaaatacatgatttttggtttaaatgattcctttctgac
gatgaaaaacacagacttatagtaaatatctggtctgatgttaaatcagaaattgaaaag
cttgtaaaaatgtcttatgtagactgaaatgatgtttactctctggttgattcttgagca
agatgaaactggtctcagctatctcagctttcttgaataaaggggcttgtagtttctcct
tctggttctgttattgaactgcctattaaatcatctttgatagaaggtttctctccaatt
gagtattttattgcagcacattgagcaagaaaatgaaaagcagatacagcacttaaaaca
gcagagtcaggatatttaacaagaagactagtagatgcttctcaagaagttgttgtcaaa
gagcatgattgttgaacagatacttgaatcttgatatcaaaagatgaagcagaaattagg
tgagataatttttatgatatgttgtattgaagagtttctttagaagacctaaaagatgat
aattgaaatacaattgtccaaaaagatgaacttataaatgcaaatcatctacaaaaaata
aaagaatcaaacatagatatgattaatgtaagatctcctcttggatgtaaaatagaatct
tgagtttgtcaaaaatgttactgaatggatttgtctaaaagagatgttgcagatatttga
gctgcagtgtgagtaattgcatctcaaagtatttgagagcctggtactcagcttaccatg
agaacgttccatggatgatgagttgctagtgcagattgagatatgactcaaggtataaaa
agaattgaagaattatttgaaataagaaaaccaaaaaatagtgcaatagttgccccattt
gattgaattcttaaaataatagaaacttgaaaacttttagaggctgaaataacttcaaat
ccagaaaaaataaattatattgtgaaagaagggtatactataactgttaagaattgagac
tatctaaaaaaatgatgagtgtatgctatgaaatgaaaaagtcagttaaaagtaaaacaa
gaatgagtagtggaaacagtttgaaaagatcatatagtattgtcagtgacagaaaaatat
aggaaacctcttgccgcttgaactcagtttaaggtaaaagattgagcacaagtatataaa
tgacaagttgtatctacatgagctttggatattaaagagtacaaatcaatagtttcagat
attgaagctcaaaaatatatagtaagagaaataaaaagagtgtttacttctcaaggtcag
gatgttaatgataaatacatggaaattatagttaagcagttgttttcaaaggtattgata
gatgattcttgagatagtgctcttgtaccatgaagtgttgtgtcttatgaaagttatcta
aaaatcaatgaagaattaacagctgagtgaaagaaaccagcttcttgagaaagactggcg
ttaggtctaactcaaatagcaaaagagtcagaatcatggttgtcgtcagcttctttccaa
gaaactatgaggattatggttgatagttctacaaaatgagcaattgatcagctacatgat
ctaaaatccaatgtgattatatgaaggttgcttccattgtgagatgtttatagaaatgag
tatttttgacaagattatgaagaacaagatgcttctaaagtagaacaagattcttctcaa
aatgataattaa
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integrated database retrieval system
