Candidatus Absconditicoccus praedator: HLG78_04330
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Entry
HLG78_04330 CDS
T07729
Symbol
dnaE
Name
(GenBank) DNA polymerase III subunit alpha
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
aprd
Candidatus Absconditicoccus praedator
Pathway
aprd03030
DNA replication
aprd03430
Mismatch repair
aprd03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
aprd00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
HLG78_04330 (dnaE)
03430 Mismatch repair
HLG78_04330 (dnaE)
03440 Homologous recombination
HLG78_04330 (dnaE)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
aprd03032
]
HLG78_04330 (dnaE)
03400 DNA repair and recombination proteins [BR:
aprd03400
]
HLG78_04330 (dnaE)
Enzymes [BR:
aprd01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
HLG78_04330 (dnaE)
DNA replication proteins [BR:
aprd03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
HLG78_04330 (dnaE)
DNA repair and recombination proteins [BR:
aprd03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
HLG78_04330 (dnaE)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
HHH_6
HHH_3
DUF3878
tRNA_anti-codon
UBQLN1
Motif
Other DBs
NCBI-ProteinID:
UFX83327
LinkDB
All DBs
Position
complement(884714..887605)
Genome browser
AA seq
963 aa
AA seq
DB search
MDIFEFEIRLLSYKGLNEKYNLNFSEEEIINLVKITNKGSLTKKLTETTPEELKQITFET
YTNYKKSFLEKYGDQTVGQYNLREYINRLEYELKVIKEMGYNTYFLIVQDYINRARKNNI
SVGPGRGSGGGSFLAYALGITDIDPLDYDLIFERFLNPARVSMPDIDTDFEDIKREDVVE
YTKQKYGSEKIAVIGTYMTMAAKAAFKDVARVFGIAFEQSNKISGYITEKTIQKSIEENP
ELQETIEENENIKKILELAAKLEGTVRQIGVHACGVVIAPEEISQYTPVQYPPLPGGKKE
PDTSRIISQYDGHFLEDIGLLKMDFLGLRNLSIIKNTIKIIKARKEKEGKKLDDIFKNYF
ETMNFYPPLDDKETYEKTFQIGETSGVFQFESDGMRAWLKKLKPNNINDIIAMVSLYRPG
PMEFIPSYVARKHGEEKVEYMPKEVYNEIKEQYGEKEAQIQAQKLEQDLSPFMDVTYGIP
VYQEQLMRIVQAVAGFSLAESDMLRRGVGKKIKEVIEQLKKEFIERATEKGYKKETCIYV
YEKMIEPAANYSFNKSHAACYSLIAYQTAYLKAHYPIEFHAALLRSVEEDTEKLAKFIDE
LGMKGFEITPPDVNKSFIHVAAIDNKVNLGFVSIKGVGVEVAKTIQKERKNNGEFKNFED
FLKRCKLAINKKSLESLAKSGALDKLEDRNTILANIDNILNRIKNSSNNGGGLFDIESMN
VGLNLEQQPKTDKLQKLFFEEETFKTFVSGHIFDGFFNYIKANFNFISMFKEVEDYGQFK
IIGFIKEMRKIRKKGTFVTIEDVSGSIDIFLKETLDLKKYDIIILEGYKGKSISTKKIIK
LELEELLEKAKKSNKYDQSEKIVGVRAKRNQSTQPEQNKEDKTKEDKSTNPQNTNIISKN
DDNTDNKSEKKEKYFDPPEDIQIISQISQIIKENPGDKEIYIGTKKVKLSEKGVQQIKNV
LKS
NT seq
2892 nt
NT seq
+upstream
nt +downstream
nt
atggatatttttgagtttgaaattcgtttactttcatataaatgattaaatgaaaaatat
aatcttaatttttctgaagaagaaataataaacttagtaaaaattacaaacaaatgaagt
ctaacaaaaaaacttactgaaacaactccagaagaactaaaacaaataacttttgaaaca
tacacaaattacaaaaaaagctttttagaaaagtattgagatcaaacagtttgacagtac
aacctcagagaatatataaatcgtttggagtacgagctcaaggttatcaaagaaatgtga
tacaacacctattttttgattgtccaagattatattaaccgagcaagaaaaaataatata
tctgtatgacctggaagatgaagttgatgaggtagtttccttgcttatgctttgggtatt
acagatatagatccacttgattatgatttgatttttgaaagattcctaaatccagcaaga
gtaagcatgcccgatatagatacagattttgaagatattaaaagagaagatgtggtagaa
tacaccaaacaaaaatattgaagcgaaaaaattgctgttatatgaacatatatgaccatg
gctgcaaaagcagctttcaaagatgtagcaagagtttttggtattgcttttgaacagtcc
aacaaaatatcttgatacataacagaaaaaacaatacaaaaatcaatagaagaaaacccg
gaactccaagaaacaatagaagaaaatgaaaatattaaaaaaattcttgaacttgcagca
aaacttgaatgaacggtaagacaaatttgagtacatgcttgctgagttgtaattgcccca
gaagaaataagccaatatactcctgtacaatacccacctttaccatgatgaaagaaagaa
ccagatacaagcaggataatatcacagtatgacggacattttttggaagatatatgactt
cttaaaatggattttttgggacttagaaaccttagtataattaaaaatacaattaaaata
attaaagcaagaaaagaaaaagaatgaaaaaaattagatgatattttcaaaaactacttt
gaaacaatgaatttttatccaccattggacgacaaagaaacatatgaaaaaacctttcaa
atttgagaaacttcttgagtatttcagtttgaatcagactgaatgagggcctggcttaaa
aaacttaaacccaacaatataaatgacattattgctatggtatctttataccgtccttga
cctatggaatttataccatcatatgttgcaagaaaacattgagaagaaaaagttgaatac
atgcctaaagaggtttataatgaaataaaagaacagtactgagaaaaagaagcacaaatt
caagcacaaaaacttgagcaagacttatctccttttatggatgtaacttattgaattcct
gtataccaagaacagcttatgagaatagtacaagcagtggcctgattctctctagctgaa
tctgacatgcttcgtagatgagtaggtaaaaaaataaaagaagtaattgaacaacttaaa
aaagagtttatagaaagagctactgaaaaatgatacaaaaaagaaacttgtatatatgtg
tatgagaaaatgatagaacctgcagcaaactactcattcaacaaatcacatgcagcttgt
tattcattgatagcatatcaaacagcataccttaaagcacattaccctatagaatttcat
gctgcattattaagatcagtagaagaagatacggagaaacttgctaaatttattgatgaa
ttatgaatgaaatgatttgaaattactcctccagatgtaaacaaatcgtttattcatgtt
gctgcaatagataataaagtaaatctttgatttgttagtataaaatgagtatgagtggaa
gtagcaaaaacaattcaaaaagaaagaaaaaacaactgagagttcaagaattttgaagac
tttctaaaaagatgtaaacttgccataaacaaaaaaagccttgaatcactagcaaaatca
tgagcacttgacaaattagaagaccgcaatactatactagcaaatatagataatatactt
aaccgaatcaaaaactcctcaaataactgatgatgactttttgatatagaaagtatgaat
gtgtgattaaatcttgaacaacaacccaaaacagacaaactacaaaaacttttttttgaa
gaagagacttttaaaacatttgtttcaggtcatatatttgattgatttttcaactatata
aaagcaaattttaattttataagtatgtttaaagaagttgaagattatgggcagttcaag
ataatttgattcataaaagagatgagaaaaattagaaaaaaatgaacatttgtaacaatt
gaagatgttagttgaagtattgatatatttttaaaagaaaccttagaccttaaaaaatat
gatataataatacttgaaggatataaaggaaaatctattagtaccaaaaaaattattaag
cttgaattagaagagcttttagaaaaagctaaaaaatcaaacaaatatgatcaatcagaa
aaaatagtttgagtaagagcaaaaagaaatcaatcaactcaacctgaacaaaacaaagaa
gacaaaacaaaagaagataaaagtacgaaccctcaaaacacaaatataatctccaaaaac
gatgataatactgacaataaatccgaaaaaaaagaaaaatattttgacccaccagaagat
attcaaataatttcacaaatcagccaaatcatcaaagaaaatccttgagacaaagaaatt
tatatttgaacaaaaaaagtaaaattatcagaaaaatgagttcaacaaataaaaaatgtg
ttgaaaagttaa
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