Candidatus Absconditicoccus praedator: HLG78_05255
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Entry
HLG78_05255 CDS
T07729
Name
(GenBank) 3'-5' exoribonuclease
KO
K02342
DNA polymerase III subunit epsilon [EC:
2.7.7.7
]
Organism
aprd
Candidatus Absconditicoccus praedator
Pathway
aprd03030
DNA replication
aprd03430
Mismatch repair
aprd03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
aprd00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
HLG78_05255
03430 Mismatch repair
HLG78_05255
03440 Homologous recombination
HLG78_05255
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
aprd03032
]
HLG78_05255
03400 DNA repair and recombination proteins [BR:
aprd03400
]
HLG78_05255
Enzymes [BR:
aprd01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
HLG78_05255
DNA replication proteins [BR:
aprd03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
HLG78_05255
DNA repair and recombination proteins [BR:
aprd03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
HLG78_05255
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_T
Rv2179c-like
RNase_H_2
Motif
Other DBs
NCBI-ProteinID:
UFX83508
LinkDB
All DBs
Position
complement(1107917..1108489)
Genome browser
AA seq
190 aa
AA seq
DB search
MIVVDIEATGLDPQTCSILSIGAISLNKPEKTFYGECKIWDGANYTQEALDINGFSIEEI
TDNSKQSEIKLMKKFLSWLEQFDEKIIAGQHPHALDVPIMKEACKRGGINYPLTQKTVDL
HACFYYYLISNGEDIPIKEDGNSDISLDSIATYFNLGEEPQPHNALTGAKYEAECFSRIF
YGKNLLPEFS
NT seq
573 nt
NT seq
+upstream
nt +downstream
nt
atgattgttgtagatattgaggcaacttgactggatccccaaacttgtagtatattaagt
atctgagccattagtttgaataaaccagaaaaaacattttattgagaatgtaaaatttgg
gattgagcaaattatacacaagaggcacttgatatcaattgattttcaatagaagagatt
acagataatagcaagcaatctgaaataaaactaatgaaaaaatttttaagttggctagaa
caatttgatgaaaaaattattgcctgacaacatccacatgcattagatgttccaataatg
aaagaagcctgcaagagatgatgaattaactatccacttacacaaaaaactgtagacctg
catgcttgtttttattattatcttatttcaaactgagaagatattcccataaaagaagat
tgaaatagtgacattagcttggacagtattgctacttatttcaacttatgagaagaacca
caacctcacaatgctctcacttgagcaaaatatgaagcagaatgcttttcaagaatattt
tatgggaaaaacttattaccagaattttcatag
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