Candidatus Absconditicoccus praedator: HLG78_05275
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Entry
HLG78_05275 CDS
T07729
Name
(GenBank) UvrD-helicase domain-containing protein
KO
K03657
ATP-dependent DNA helicase UvrD/PcrA [EC:
5.6.2.4
]
Organism
aprd
Candidatus Absconditicoccus praedator
Pathway
aprd03420
Nucleotide excision repair
aprd03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
aprd00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
HLG78_05275
03430 Mismatch repair
HLG78_05275
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
aprd03400
]
HLG78_05275
Enzymes [BR:
aprd01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
HLG78_05275
DNA repair and recombination proteins [BR:
aprd03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
HLG78_05275
MMR (mismatch excision repair)
Other MMR factors
HLG78_05275
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
UvrD_C_2
AAA_30
Viral_helicase1
AAA_12
DEAD
PcrA_UvrD_tudor
AAA_14
PhoH
Motif
Other DBs
NCBI-ProteinID:
UFX83512
LinkDB
All DBs
Position
complement(1112911..1115058)
Genome browser
AA seq
715 aa
AA seq
DB search
MIEDKLKKELNEQQYEAASWIKTSSLILAGAGSGKTRVLIYKVAKLIFGEGISPSQILTV
TFTNKAANEMKSRIFDFSKSLGYNLGNNSLLRTGTFHSIFLKILKSDIQSLNMGYTSSFG
VYDQQESLTLIKTISNNLGYKDIITPKEVKSVISNAKNSGQTPHKFLTLAQNENAEIIGR
IYQEYQKQLVESNSVDFDDLLLLTKILFENNEDILEKYRQKFKYILVDEAQDTNQIQFDI
IKMLAGKDGNVTFIGDDFQSIYSRRGAVMENFLNLERFWDNIQKFKLETNYRSSPTIVEA
GNYLISKNKFQYEKQVKSSKENDSKIRSFCFKDEYDEAGQLSELIQKLINEKNLKFNDIA
ILYRTNAQSQPFEQALLSLGIPYKIWGGFKFFERKEIKDIISYIKYIINPKDSISLKRII
NTPNRKIGATTIKNIENFCLENGYDLNYAIENIETLPIPITSGPKNNIKQFSTFIKFTRN
QIPNTNPKNLINNIISNIKYYEYLVNQDGKEKADEKYENIGQLINIASKFEVQDQNGQEI
LEQFLEEISLMSDTEEDEEGTENSVKLMSIHGSKGLEFPVIMLAGLEENIFPLQKAKFND
KEMEEERRLMYVAITRAKDLLFFSYANFRMKRGQLFFNKPSRFLEEIPDELINHYDLSGN
QSYSSVSNINEGDRIKHKLFGQGDVLEIANNTAMIKFDNPKYGIRKMDTKFLEKI
NT seq
2148 nt
NT seq
+upstream
nt +downstream
nt
atgatcgaagataaacttaaaaaagaactaaatgaacaacaatatgaagctgctagttgg
attaaaacaagtagtttaatattggcttgagctggtagttgaaaaactagagtattaata
tataaggtggctaaactcatattttgagaatgaatatctccatctcaaattttgacagta
acatttacgaacaaagctgcaaacgaaatgaagtctagaatttttgatttttcaaaaagc
ctatgatataatctatgaaataattcattactacggacttgaacatttcatagtattttt
ttaaaaatcctaaaatcagatatacaatcacttaatatgtgatacacaagttcattttga
gtatatgatcaacaagaatccttaacacttataaaaaccatatcaaataatttatgatac
aaagatataataactccaaaagaggtaaaatcagtaatttcaaatgcaaaaaatagctga
caaacaccacacaaatttctcacattagctcaaaatgaaaatgcagaaattatatgaaga
atatatcaagaataccaaaaacaactagtagaatcaaactctgtagattttgatgattta
ttattactaacaaaaattttatttgaaaacaacgaagacatattagaaaaatacagacaa
aagttcaaatacatacttgtagacgaagcacaagatacaaaccaaatacagtttgatatt
atcaaaatgttggcttgaaaagatgggaatgttacatttatatgagatgatttccaaagt
atatattcacgaagatgagctgtgatggaaaactttttgaatttagaaagattttgggat
aatatccaaaaattcaaacttgaaaccaactacagatcaagtccaacaattgttgaagca
tgaaactatctcatatctaaaaacaaatttcaatatgaaaaacaagtaaagtcttcaaaa
gaaaatgatagtaaaattagatcattttgtttcaaagacgaatatgatgaagccggtcaa
cttagtgaacttatacaaaaacttataaatgaaaagaatctaaaattcaatgatatagca
atactttatagaacaaatgcacaaagtcaaccatttgaacaagctctattatcattatga
ataccctataagatatggtgatgatttaaattttttgaaagaaaagaaataaaagacata
ataagctacattaaatatataatcaatccaaaagatagcatctccctaaaaagaataata
aatactccaaatagaaaaatatgagcaactactattaaaaatattgaaaatttttgtttg
gaaaactgatatgatcttaattatgctattgaaaatatagaaactttaccaataccaata
acatcctgacccaaaaacaatatcaaacagtttagcacatttattaaatttacaagaaac
caaataccaaatacaaatcctaagaacttgataaacaatatcatctcaaatattaaatat
tatgagtaccttgtaaaccaagatggaaaagaaaaagcagatgaaaaatatgaaaatata
tgacaacttataaatattgcttctaaatttgaagtacaagatcaaaacggtcaagaaatt
ttagaacaatttctagaagaaatatcattaatgagtgatacagaagaggatgaagaatga
acagaaaattcagtaaaacttatgagtatacattgaagtaaatgacttgagtttccagta
ataatgcttgcttgactagaagaaaatatatttccactacaaaaagcaaaattcaacgat
aaagaaatggaagaagaaagaagacttatgtatgtagcaataaccagagcaaaagattta
ttgtttttctcttatgcaaattttagaatgaaacgatgacaactttttttcaacaaacca
tcaagatttttggaagagatacctgatgaactaataaatcattatgacctttcaggaaat
caatcatactcttcagtttcaaacataaatgaatgagatagaattaaacataaattattt
tgacagtgagatgtacttgaaattgctaacaacacagcaatgataaaatttgataatcct
aaatactgaattagaaaaatggacaccaaatttcttgaaaaaatataa
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